Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LRCH3Q96II8 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LRCH3Q96II8 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LRCH3Q96II8 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LRCH3Q96II8 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LRCH3Q96II8 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 DDX39AP1-201ENST00000445147 1181 ntBASIC16.64■□□□□ 0.25
LRCH3Q96II8 HIST2H2BB-201ENST00000449108 381 ntBASIC16.64■□□□□ 0.25
LRCH3Q96II8 AC100850.1-201ENST00000506768 649 ntBASIC16.64■□□□□ 0.25
LRCH3Q96II8 AC243562.2-201ENST00000561247 970 ntBASIC16.64■□□□□ 0.25
LRCH3Q96II8 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 AL118516.1-201ENST00000564152 670 ntBASIC16.64■□□□□ 0.25
LRCH3Q96II8 BNIP3P13-201ENST00000599968 566 ntBASIC16.64■□□□□ 0.25
LRCH3Q96II8 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 AC007718.1-201ENST00000621078 280 ntBASIC16.64■□□□□ 0.25
LRCH3Q96II8 AL161773.1-201ENST00000624845 863 ntBASIC16.64■□□□□ 0.25
LRCH3Q96II8 AC004923.1-202ENST00000642106 209 ntBASIC16.64■□□□□ 0.25
LRCH3Q96II8 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LRCH3Q96II8 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LRCH3Q96II8 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LRCH3Q96II8 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LRCH3Q96II8 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
LRCH3Q96II8 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 KRT8P4-201ENST00000509735 1454 ntBASIC16.63■□□□□ 0.25
LRCH3Q96II8 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 AP000356.3-201ENST00000382243 753 ntBASIC16.63■□□□□ 0.25
LRCH3Q96II8 ACTBP8-201ENST00000403258 1108 ntBASIC16.63■□□□□ 0.25
LRCH3Q96II8 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 AC073150.1-201ENST00000450406 1084 ntBASIC16.63■□□□□ 0.25
LRCH3Q96II8 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 SAMD11P1-201ENST00000571429 661 ntBASIC16.63■□□□□ 0.25
LRCH3Q96II8 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC16.63■□□□□ 0.25
LRCH3Q96II8 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
LRCH3Q96II8 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 GGT4P-201ENST00000623672 1708 ntBASIC16.62■□□□□ 0.25
LRCH3Q96II8 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.62■□□□□ 0.25
LRCH3Q96II8 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LRCH3Q96II8 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms