Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 KRT8P14-201ENST00000414254 1442 ntBASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
SMC1BQ8NDV3 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
SMC1BQ8NDV3 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
SMC1BQ8NDV3 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.14■□□□□ 0.5
SMC1BQ8NDV3 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SMC1BQ8NDV3 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SMC1BQ8NDV3 AL603756.1-201ENST00000606511 2163 ntBASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 NHP2-202ENST00000314397 599 ntTSL 2 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 BAK1P1-201ENST00000317045 636 ntBASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 LYPLA2P1-203ENST00000447689 696 ntBASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 AREG-202ENST00000502307 956 ntTSL 5 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 AC008723.1-201ENST00000506922 207 ntBASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 LINC00431-202ENST00000636375 159 ntBASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SMC1BQ8NDV3 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 SOD2-202ENST00000367054 815 ntTSL 2 BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 AL357373.1-201ENST00000394974 322 ntBASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 ACTBP7-201ENST00000418351 1124 ntBASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 PAM16-211ENST00000575848 518 ntTSL 3 BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 AC087392.5-201ENST00000612517 489 ntBASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 MME-218ENST00000625667 363 ntTSL 5 BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 CROCCP2-202ENST00000412962 2773 ntBASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMC1BQ8NDV3 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms