Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC013726.1-201ENST00000563747 2285 ntBASIC9.24□□□□□ -0.93
HSPG2P98160 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 PTGER4P2-201ENST00000328411 252 ntBASIC9.24□□□□□ -0.93
HSPG2P98160 PTGER4P3-201ENST00000458150 252 ntBASIC9.24□□□□□ -0.93
HSPG2P98160 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC9.24□□□□□ -0.93
HSPG2P98160 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC9.24□□□□□ -0.93
HSPG2P98160 AC013553.1-201ENST00000560906 267 ntBASIC9.24□□□□□ -0.93
HSPG2P98160 AC004466.2-201ENST00000614749 516 ntBASIC9.24□□□□□ -0.93
HSPG2P98160 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC9.24□□□□□ -0.93
HSPG2P98160 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC9.24□□□□□ -0.93
HSPG2P98160 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC9.24□□□□□ -0.93
HSPG2P98160 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC9.24□□□□□ -0.93
HSPG2P98160 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC9.24□□□□□ -0.93
HSPG2P98160 RPL35P9-201ENST00000446059 350 ntBASIC9.24□□□□□ -0.93
HSPG2P98160 AC004066.1-201ENST00000502488 802 ntBASIC9.24□□□□□ -0.93
HSPG2P98160 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC9.24□□□□□ -0.93
HSPG2P98160 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC9.24□□□□□ -0.93
HSPG2P98160 FOXN3-AS2-201ENST00000554071 1262 ntBASIC9.24□□□□□ -0.93
HSPG2P98160 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC9.24□□□□□ -0.93
HSPG2P98160 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC9.24□□□□□ -0.93
HSPG2P98160 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC9.24□□□□□ -0.93
HSPG2P98160 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC9.24□□□□□ -0.93
HSPG2P98160 AF274858.1-201ENST00000406288 372 ntBASIC9.24□□□□□ -0.93
HSPG2P98160 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC9.24□□□□□ -0.93
HSPG2P98160 AC010900.1-201ENST00000449849 1296 ntBASIC9.24□□□□□ -0.93
HSPG2P98160 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC9.24□□□□□ -0.93
HSPG2P98160 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC9.24□□□□□ -0.93
HSPG2P98160 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC9.24□□□□□ -0.93
HSPG2P98160 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC9.24□□□□□ -0.93
HSPG2P98160 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC9.24□□□□□ -0.93
HSPG2P98160 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC9.24□□□□□ -0.93
HSPG2P98160 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC9.24□□□□□ -0.93
HSPG2P98160 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC9.24□□□□□ -0.93
HSPG2P98160 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC9.24□□□□□ -0.93
HSPG2P98160 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC9.24□□□□□ -0.93
HSPG2P98160 AC006058.4-201ENST00000624016 1670 ntBASIC9.23□□□□□ -0.93
HSPG2P98160 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC9.23□□□□□ -0.93
HSPG2P98160 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC9.23□□□□□ -0.93
HSPG2P98160 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC9.23□□□□□ -0.93
HSPG2P98160 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 NOC2LP2-201ENST00000407594 1944 ntBASIC9.23□□□□□ -0.93
HSPG2P98160 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC9.23□□□□□ -0.93
HSPG2P98160 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 RNA5SP359-201ENST00000364838 113 ntBASIC9.23□□□□□ -0.93
HSPG2P98160 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC9.23□□□□□ -0.93
HSPG2P98160 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC9.23□□□□□ -0.93
HSPG2P98160 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC9.23□□□□□ -0.93
HSPG2P98160 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC9.23□□□□□ -0.93
HSPG2P98160 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC9.23□□□□□ -0.93
HSPG2P98160 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC9.23□□□□□ -0.93
HSPG2P98160 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC9.23□□□□□ -0.93
HSPG2P98160 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC9.23□□□□□ -0.93
HSPG2P98160 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC9.23□□□□□ -0.93
HSPG2P98160 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC9.23□□□□□ -0.93
HSPG2P98160 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC9.23□□□□□ -0.93
HSPG2P98160 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC9.23□□□□□ -0.93
HSPG2P98160 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC9.23□□□□□ -0.93
HSPG2P98160 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 MPI-203ENST00000535694 1523 ntTSL 2 BASIC9.23□□□□□ -0.93
HSPG2P98160 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC9.23□□□□□ -0.93
HSPG2P98160 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC9.23□□□□□ -0.93
HSPG2P98160 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC9.23□□□□□ -0.93
HSPG2P98160 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
HSPG2P98160 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms