Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.41■□□□□ 0.38
TPM4P67936 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.41■□□□□ 0.38
TPM4P67936 AP001005.1-201ENST00000571755 1248 ntBASIC17.41■□□□□ 0.38
TPM4P67936 AP002472.1-201ENST00000577490 586 ntBASIC17.41■□□□□ 0.38
TPM4P67936 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.41■□□□□ 0.38
TPM4P67936 AC097359.3-201ENST00000603982 1210 ntBASIC17.41■□□□□ 0.38
TPM4P67936 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.41■□□□□ 0.38
TPM4P67936 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TPM4P67936 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TPM4P67936 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TPM4P67936 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TPM4P67936 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TPM4P67936 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TPM4P67936 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TPM4P67936 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TPM4P67936 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TPM4P67936 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TPM4P67936 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TPM4P67936 AC140479.7-201ENST00000636301 2332 ntBASIC17.41■□□□□ 0.38
TPM4P67936 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TPM4P67936 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TPM4P67936 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC17.4■□□□□ 0.38
TPM4P67936 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC17.4■□□□□ 0.38
TPM4P67936 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
TPM4P67936 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
TPM4P67936 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TPM4P67936 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
TPM4P67936 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.4■□□□□ 0.38
TPM4P67936 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.4■□□□□ 0.38
TPM4P67936 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.4■□□□□ 0.38
TPM4P67936 PDPK2P-202ENST00000562415 1191 ntBASIC17.4■□□□□ 0.38
TPM4P67936 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
TPM4P67936 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
TPM4P67936 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.4■□□□□ 0.38
TPM4P67936 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.4■□□□□ 0.38
TPM4P67936 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC17.4■□□□□ 0.38
TPM4P67936 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 AC084364.1-201ENST00000551967 1556 ntBASIC17.4■□□□□ 0.38
TPM4P67936 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TPM4P67936 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
TPM4P67936 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.39■□□□□ 0.38
TPM4P67936 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC17.39■□□□□ 0.38
TPM4P67936 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.39■□□□□ 0.38
TPM4P67936 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TPM4P67936 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TPM4P67936 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
TPM4P67936 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TPM4P67936 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TPM4P67936 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TPM4P67936 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.39■□□□□ 0.37
TPM4P67936 FAAHP1-202ENST00000446499 1238 ntBASIC17.39■□□□□ 0.37
TPM4P67936 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
TPM4P67936 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.39■□□□□ 0.37
TPM4P67936 KRT18P56-201ENST00000507275 550 ntBASIC17.39■□□□□ 0.37
TPM4P67936 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.39■□□□□ 0.37
TPM4P67936 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.39■□□□□ 0.37
TPM4P67936 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC17.39■□□□□ 0.37
TPM4P67936 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TPM4P67936 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.39■□□□□ 0.37
TPM4P67936 AC099522.2-201ENST00000607001 744 ntBASIC17.39■□□□□ 0.37
TPM4P67936 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TPM4P67936 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
TPM4P67936 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TPM4P67936 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.39■□□□□ 0.37
TPM4P67936 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
TPM4P67936 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TPM4P67936 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TPM4P67936 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.39■□□□□ 0.37
TPM4P67936 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
TPM4P67936 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TPM4P67936 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
TPM4P67936 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TPM4P67936 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TPM4P67936 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TPM4P67936 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TPM4P67936 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC17.39■□□□□ 0.37
TPM4P67936 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TPM4P67936 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
TPM4P67936 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
TPM4P67936 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC17.38■□□□□ 0.37
TPM4P67936 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
TPM4P67936 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms