Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.69□□□□□ -0.22
SOX2P48431 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC13.69□□□□□ -0.22
SOX2P48431 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 HLA-H-201ENST00000383620 1096 ntBASIC13.69□□□□□ -0.22
SOX2P48431 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC13.69□□□□□ -0.22
SOX2P48431 RPL13AP23-201ENST00000480739 586 ntBASIC13.69□□□□□ -0.22
SOX2P48431 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC13.69□□□□□ -0.22
SOX2P48431 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC13.69□□□□□ -0.22
SOX2P48431 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC13.69□□□□□ -0.22
SOX2P48431 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC13.69□□□□□ -0.22
SOX2P48431 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC13.69□□□□□ -0.22
SOX2P48431 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC13.69□□□□□ -0.22
SOX2P48431 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
SOX2P48431 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC13.69□□□□□ -0.22
SOX2P48431 AC140479.7-201ENST00000636301 2332 ntBASIC13.69□□□□□ -0.22
SOX2P48431 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
SOX2P48431 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC13.69□□□□□ -0.22
SOX2P48431 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.69□□□□□ -0.22
SOX2P48431 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.69□□□□□ -0.22
SOX2P48431 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.69□□□□□ -0.22
SOX2P48431 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX2P48431 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
SOX2P48431 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
SOX2P48431 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
SOX2P48431 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.68□□□□□ -0.22
SOX2P48431 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
SOX2P48431 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC13.68□□□□□ -0.22
SOX2P48431 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.68□□□□□ -0.22
SOX2P48431 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.68□□□□□ -0.22
SOX2P48431 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
SOX2P48431 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC13.68□□□□□ -0.22
SOX2P48431 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC13.68□□□□□ -0.22
SOX2P48431 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC13.68□□□□□ -0.22
SOX2P48431 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC13.68□□□□□ -0.22
SOX2P48431 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC13.68□□□□□ -0.22
SOX2P48431 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC13.68□□□□□ -0.22
SOX2P48431 NAA38-207ENST00000576861 556 ntTSL 3 BASIC13.68□□□□□ -0.22
SOX2P48431 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC13.68□□□□□ -0.22
SOX2P48431 AC026979.3-201ENST00000607315 403 ntBASIC13.68□□□□□ -0.22
SOX2P48431 AC091812.2-201ENST00000619081 385 ntBASIC13.68□□□□□ -0.22
SOX2P48431 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
SOX2P48431 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.68□□□□□ -0.22
SOX2P48431 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
SOX2P48431 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
SOX2P48431 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
SOX2P48431 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.68□□□□□ -0.22
SOX2P48431 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.68□□□□□ -0.22
SOX2P48431 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SOX2P48431 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
SOX2P48431 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.67□□□□□ -0.22
SOX2P48431 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
SOX2P48431 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
SOX2P48431 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13.67□□□□□ -0.22
SOX2P48431 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
SOX2P48431 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms