Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 MIR6775-201ENST00000617557 69 ntBASIC14.22□□□□□ -0.13
RFC3P40938 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFC3P40938 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFC3P40938 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
RFC3P40938 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFC3P40938 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFC3P40938 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFC3P40938 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFC3P40938 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFC3P40938 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFC3P40938 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RFC3P40938 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFC3P40938 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RFC3P40938 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RFC3P40938 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
RFC3P40938 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.21□□□□□ -0.13
RFC3P40938 MSTO2P-201ENST00000314835 1709 ntBASIC14.21□□□□□ -0.13
RFC3P40938 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFC3P40938 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFC3P40938 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFC3P40938 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RFC3P40938 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.21□□□□□ -0.13
RFC3P40938 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.21□□□□□ -0.13
RFC3P40938 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFC3P40938 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.21□□□□□ -0.13
RFC3P40938 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFC3P40938 AC126177.1-201ENST00000547829 2218 ntBASIC14.21□□□□□ -0.13
RFC3P40938 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFC3P40938 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
RFC3P40938 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC14.21□□□□□ -0.13
RFC3P40938 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RFC3P40938 ANKRD19P-201ENST00000338192 862 ntBASIC14.21□□□□□ -0.13
RFC3P40938 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RFC3P40938 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.21□□□□□ -0.13
RFC3P40938 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC14.21□□□□□ -0.13
RFC3P40938 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.21□□□□□ -0.13
RFC3P40938 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.21□□□□□ -0.13
RFC3P40938 RPL13AP25-201ENST00000484130 612 ntBASIC14.21□□□□□ -0.13
RFC3P40938 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC14.21□□□□□ -0.13
RFC3P40938 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFC3P40938 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.21□□□□□ -0.13
RFC3P40938 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.21□□□□□ -0.13
RFC3P40938 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.21□□□□□ -0.13
RFC3P40938 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.21□□□□□ -0.13
RFC3P40938 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.21□□□□□ -0.13
RFC3P40938 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.21□□□□□ -0.13
RFC3P40938 AC233724.13-201ENST00000598383 410 ntBASIC14.21□□□□□ -0.13
RFC3P40938 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.21□□□□□ -0.13
RFC3P40938 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFC3P40938 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFC3P40938 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.21□□□□□ -0.13
RFC3P40938 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RFC3P40938 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.13
RFC3P40938 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.21□□□□□ -0.13
RFC3P40938 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.13
RFC3P40938 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
RFC3P40938 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
RFC3P40938 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.21□□□□□ -0.14
RFC3P40938 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
RFC3P40938 AC104581.4-201ENST00000623126 3052 ntBASIC14.21□□□□□ -0.14
RFC3P40938 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
RFC3P40938 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC14.2□□□□□ -0.14
RFC3P40938 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.2□□□□□ -0.14
RFC3P40938 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.2□□□□□ -0.14
RFC3P40938 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
RFC3P40938 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.2□□□□□ -0.14
RFC3P40938 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
RFC3P40938 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.2□□□□□ -0.14
RFC3P40938 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.2□□□□□ -0.14
RFC3P40938 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.2□□□□□ -0.14
RFC3P40938 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.2□□□□□ -0.14
RFC3P40938 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC14.2□□□□□ -0.14
RFC3P40938 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC14.2□□□□□ -0.14
RFC3P40938 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
RFC3P40938 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.2□□□□□ -0.14
RFC3P40938 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
RFC3P40938 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.2□□□□□ -0.14
RFC3P40938 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.2□□□□□ -0.14
RFC3P40938 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
RFC3P40938 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RFC3P40938 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms