Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.19□□□□□ -0.14
MSX1P28360 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.19□□□□□ -0.14
MSX1P28360 AC022532.1-201ENST00000624563 1728 ntBASIC14.19□□□□□ -0.14
MSX1P28360 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.19□□□□□ -0.14
MSX1P28360 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
MSX1P28360 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
MSX1P28360 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.19□□□□□ -0.14
MSX1P28360 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.19□□□□□ -0.14
MSX1P28360 ELK1P1-201ENST00000485699 580 ntBASIC14.19□□□□□ -0.14
MSX1P28360 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
MSX1P28360 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.19□□□□□ -0.14
MSX1P28360 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.19□□□□□ -0.14
MSX1P28360 AC093726.1-201ENST00000608064 963 ntBASIC14.19□□□□□ -0.14
MSX1P28360 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.19□□□□□ -0.14
MSX1P28360 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
MSX1P28360 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.19□□□□□ -0.14
MSX1P28360 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
MSX1P28360 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.19□□□□□ -0.14
MSX1P28360 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.19□□□□□ -0.14
MSX1P28360 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
MSX1P28360 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.19□□□□□ -0.14
MSX1P28360 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.19□□□□□ -0.14
MSX1P28360 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
MSX1P28360 PAUPAR-201ENST00000630360 2965 ntBASIC14.19□□□□□ -0.14
MSX1P28360 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.18□□□□□ -0.14
MSX1P28360 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.18□□□□□ -0.14
MSX1P28360 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
MSX1P28360 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.18□□□□□ -0.14
MSX1P28360 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.18□□□□□ -0.14
MSX1P28360 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.18□□□□□ -0.14
MSX1P28360 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.18□□□□□ -0.14
MSX1P28360 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.18□□□□□ -0.14
MSX1P28360 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.18□□□□□ -0.14
MSX1P28360 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
MSX1P28360 FAM86LP-201ENST00000478302 853 ntBASIC14.18□□□□□ -0.14
MSX1P28360 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.18□□□□□ -0.14
MSX1P28360 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.18□□□□□ -0.14
MSX1P28360 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.18□□□□□ -0.14
MSX1P28360 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.18□□□□□ -0.14
MSX1P28360 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.18□□□□□ -0.14
MSX1P28360 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.18□□□□□ -0.14
MSX1P28360 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.18□□□□□ -0.14
MSX1P28360 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.18□□□□□ -0.14
MSX1P28360 CTBP2P3-201ENST00000585629 1255 ntBASIC14.18□□□□□ -0.14
MSX1P28360 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.18□□□□□ -0.14
MSX1P28360 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.18□□□□□ -0.14
MSX1P28360 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC14.18□□□□□ -0.14
MSX1P28360 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.18□□□□□ -0.14
MSX1P28360 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC14.18□□□□□ -0.14
MSX1P28360 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.18□□□□□ -0.14
MSX1P28360 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
MSX1P28360 SSR4P1-203ENST00000599569 2260 ntBASIC14.18□□□□□ -0.14
MSX1P28360 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC14.18□□□□□ -0.14
MSX1P28360 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
MSX1P28360 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.18□□□□□ -0.14
MSX1P28360 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.18□□□□□ -0.14
MSX1P28360 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.18□□□□□ -0.14
MSX1P28360 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms