Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 USP4-203ENST00000415188 1454 ntTSL 3 BASIC12.06□□□□□ -0.48
CXCL1P09341 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 AC018529.2-202ENST00000611482 3087 ntBASIC12.06□□□□□ -0.48
CXCL1P09341 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC12.06□□□□□ -0.48
CXCL1P09341 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC12.06□□□□□ -0.48
CXCL1P09341 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC12.06□□□□□ -0.48
CXCL1P09341 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
CXCL1P09341 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC12.06□□□□□ -0.48
CXCL1P09341 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC12.06□□□□□ -0.48
CXCL1P09341 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
CXCL1P09341 AC015818.8-201ENST00000587907 1519 ntBASIC12.06□□□□□ -0.48
CXCL1P09341 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
CXCL1P09341 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC12.06□□□□□ -0.48
CXCL1P09341 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC12.06□□□□□ -0.48
CXCL1P09341 PI4KAP1-204ENST00000612579 1703 ntBASIC12.06□□□□□ -0.48
CXCL1P09341 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC12.05□□□□□ -0.48
CXCL1P09341 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC12.05□□□□□ -0.48
CXCL1P09341 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
CXCL1P09341 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC12.05□□□□□ -0.48
CXCL1P09341 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC12.05□□□□□ -0.48
CXCL1P09341 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
CXCL1P09341 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
CXCL1P09341 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 TSN-212ENST00000536142 3328 ntTSL 2 BASIC12.05□□□□□ -0.48
CXCL1P09341 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC12.05□□□□□ -0.48
CXCL1P09341 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC12.05□□□□□ -0.48
CXCL1P09341 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC12.05□□□□□ -0.48
CXCL1P09341 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC12.05□□□□□ -0.48
CXCL1P09341 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 NUS1P2-201ENST00000417358 873 ntBASIC12.05□□□□□ -0.48
CXCL1P09341 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC12.05□□□□□ -0.48
CXCL1P09341 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 AC245100.5-201ENST00000452108 331 ntBASIC12.05□□□□□ -0.48
CXCL1P09341 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC12.05□□□□□ -0.48
CXCL1P09341 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC12.05□□□□□ -0.48
CXCL1P09341 FICD-205ENST00000552758 603 ntTSL 2 BASIC12.05□□□□□ -0.48
CXCL1P09341 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC12.05□□□□□ -0.48
CXCL1P09341 AL160237.2-201ENST00000556165 472 ntBASIC12.05□□□□□ -0.48
CXCL1P09341 NKAPP1-205ENST00000585790 367 ntBASIC12.05□□□□□ -0.48
CXCL1P09341 DBP-204ENST00000599385 709 ntTSL 3 BASIC12.05□□□□□ -0.48
CXCL1P09341 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
CXCL1P09341 GGTLC5P-201ENST00000617623 998 ntBASIC12.05□□□□□ -0.48
CXCL1P09341 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC12.05□□□□□ -0.48
CXCL1P09341 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC12.05□□□□□ -0.48
CXCL1P09341 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC12.05□□□□□ -0.48
CXCL1P09341 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
CXCL1P09341 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
CXCL1P09341 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC12.05□□□□□ -0.48
CXCL1P09341 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC12.05□□□□□ -0.48
CXCL1P09341 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
CXCL1P09341 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC12.05□□□□□ -0.48
CXCL1P09341 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
CXCL1P09341 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CXCL1P09341 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
CXCL1P09341 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC12.04□□□□□ -0.48
CXCL1P09341 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC12.04□□□□□ -0.48
CXCL1P09341 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC12.04□□□□□ -0.48
CXCL1P09341 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms