Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.05■□□□□ -0
LDLRP01130 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.05■□□□□ -0
LDLRP01130 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.05■□□□□ -0
LDLRP01130 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.05■□□□□ -0
LDLRP01130 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.05■□□□□ -0
LDLRP01130 AC245100.5-201ENST00000452108 331 ntBASIC15.05■□□□□ -0
LDLRP01130 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.05■□□□□ -0
LDLRP01130 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.05■□□□□ -0
LDLRP01130 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.05■□□□□ -0
LDLRP01130 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.05■□□□□ -0
LDLRP01130 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LDLRP01130 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC15.05■□□□□ -0
LDLRP01130 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LDLRP01130 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
LDLRP01130 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
LDLRP01130 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
LDLRP01130 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
LDLRP01130 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LDLRP01130 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
LDLRP01130 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
LDLRP01130 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
LDLRP01130 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.05■□□□□ -0
LDLRP01130 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.05■□□□□ -0
LDLRP01130 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LDLRP01130 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.05■□□□□ -0
LDLRP01130 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
LDLRP01130 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LDLRP01130 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
LDLRP01130 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.05■□□□□ -0
LDLRP01130 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LDLRP01130 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
LDLRP01130 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LDLRP01130 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.04■□□□□ -0
LDLRP01130 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.04■□□□□ -0
LDLRP01130 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
LDLRP01130 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.04■□□□□ -0
LDLRP01130 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.04■□□□□ -0
LDLRP01130 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
LDLRP01130 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.04■□□□□ -0
LDLRP01130 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.04■□□□□ -0
LDLRP01130 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
LDLRP01130 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.04■□□□□ -0
LDLRP01130 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.04■□□□□ -0
LDLRP01130 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.04■□□□□ -0
LDLRP01130 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
LDLRP01130 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.04■□□□□ -0
LDLRP01130 U91328.1-201ENST00000437528 223 ntBASIC15.04■□□□□ -0
LDLRP01130 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 ALG1L8P-201ENST00000533887 760 ntBASIC15.04■□□□□ -0
LDLRP01130 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.04■□□□□ -0
LDLRP01130 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC15.04■□□□□ -0
LDLRP01130 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.04■□□□□ -0
LDLRP01130 AC004233.3-201ENST00000607794 1269 ntBASIC15.04■□□□□ -0
LDLRP01130 MIR6799-201ENST00000620297 69 ntBASIC15.04■□□□□ -0
LDLRP01130 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.04■□□□□ -0
LDLRP01130 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.04■□□□□ -0
LDLRP01130 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
LDLRP01130 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
LDLRP01130 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.04■□□□□ -0
LDLRP01130 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.04■□□□□ -0
LDLRP01130 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
LDLRP01130 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
LDLRP01130 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
LDLRP01130 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
LDLRP01130 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
LDLRP01130 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
LDLRP01130 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
LDLRP01130 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
LDLRP01130 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LDLRP01130 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
LDLRP01130 MROH4P-201ENST00000431302 1578 ntBASIC15.03■□□□□ -0
LDLRP01130 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.03■□□□□ -0
LDLRP01130 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
LDLRP01130 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LDLRP01130 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LDLRP01130 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
LDLRP01130 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
LDLRP01130 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LDLRP01130 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
LDLRP01130 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
LDLRP01130 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LDLRP01130 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.03■□□□□ -0
LDLRP01130 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.03■□□□□ -0
LDLRP01130 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms