Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SOX1O00570 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX1O00570 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX1O00570 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SOX1O00570 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX1O00570 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX1O00570 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
SOX1O00570 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.16■□□□□ 0.18
SOX1O00570 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX1O00570 MIR566-201ENST00000385187 94 ntBASIC16.16■□□□□ 0.18
SOX1O00570 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SOX1O00570 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC16.16■□□□□ 0.18
SOX1O00570 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC16.16■□□□□ 0.18
SOX1O00570 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX1O00570 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX1O00570 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX1O00570 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.16■□□□□ 0.18
SOX1O00570 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX1O00570 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SOX1O00570 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SOX1O00570 FKBP4P6-201ENST00000457486 1332 ntBASIC16.16■□□□□ 0.18
SOX1O00570 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SOX1O00570 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX1O00570 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX1O00570 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SOX1O00570 AMT-239ENST00000636865 1914 ntTSL 5 BASIC16.15■□□□□ 0.18
SOX1O00570 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SOX1O00570 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC16.15■□□□□ 0.18
SOX1O00570 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.15■□□□□ 0.18
SOX1O00570 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SOX1O00570 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.15■□□□□ 0.18
SOX1O00570 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SOX1O00570 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
SOX1O00570 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SOX1O00570 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC16.15■□□□□ 0.18
SOX1O00570 FAM58BP-201ENST00000439056 645 ntBASIC16.15■□□□□ 0.18
SOX1O00570 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
SOX1O00570 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 RN7SL81P-201ENST00000493781 261 ntBASIC16.15■□□□□ 0.18
SOX1O00570 ORAOV1P1-201ENST00000503108 395 ntBASIC16.15■□□□□ 0.18
SOX1O00570 AC022616.1-201ENST00000518688 554 ntBASIC16.15■□□□□ 0.18
SOX1O00570 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC16.15■□□□□ 0.18
SOX1O00570 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC16.15■□□□□ 0.18
SOX1O00570 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC16.15■□□□□ 0.18
SOX1O00570 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC16.15■□□□□ 0.18
SOX1O00570 AP005212.2-201ENST00000584979 510 ntBASIC16.15■□□□□ 0.18
SOX1O00570 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
SOX1O00570 CMC2-224ENST00000630396 481 ntTSL 5 BASIC16.15■□□□□ 0.18
SOX1O00570 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.15■□□□□ 0.18
SOX1O00570 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 AL008718.2-201ENST00000609206 1313 ntBASIC16.15■□□□□ 0.18
SOX1O00570 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX1O00570 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SOX1O00570 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
SOX1O00570 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
SOX1O00570 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.14■□□□□ 0.17
SOX1O00570 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.14■□□□□ 0.17
SOX1O00570 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
SOX1O00570 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX1O00570 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
SOX1O00570 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SOX1O00570 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC16.14■□□□□ 0.17
SOX1O00570 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX1O00570 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX1O00570 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX1O00570 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX1O00570 AP000593.2-201ENST00000542775 1433 ntBASIC16.14■□□□□ 0.17
SOX1O00570 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC16.14■□□□□ 0.17
SOX1O00570 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SOX1O00570 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC16.14■□□□□ 0.17
SOX1O00570 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX1O00570 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX1O00570 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC16.14■□□□□ 0.17
SOX1O00570 NCR3-202ENST00000376071 541 ntTSL 5 BASIC16.14■□□□□ 0.17
SOX1O00570 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX1O00570 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC16.14■□□□□ 0.17
SOX1O00570 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms