Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 WASH3P-207ENST00000560956 1394 ntBASIC11.38□□□□□ -0.59
SMKR1H3BMG3 FO538757.1-201ENST00000623083 1397 ntBASIC11.38□□□□□ -0.59
SMKR1H3BMG3 AC018529.2-202ENST00000611482 3087 ntBASIC11.38□□□□□ -0.59
SMKR1H3BMG3 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
SMKR1H3BMG3 PCDHGB8P-201ENST00000502926 1973 ntBASIC11.37□□□□□ -0.59
SMKR1H3BMG3 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 AL691432.1-201ENST00000596308 1422 ntBASIC11.37□□□□□ -0.59
SMKR1H3BMG3 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 RPS2P1-201ENST00000434010 821 ntBASIC11.37□□□□□ -0.59
SMKR1H3BMG3 AC108073.2-201ENST00000464002 357 ntBASIC11.37□□□□□ -0.59
SMKR1H3BMG3 CXCL1P1-201ENST00000502804 216 ntBASIC11.37□□□□□ -0.59
SMKR1H3BMG3 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 MIR1199-201ENST00000621445 119 ntBASIC11.37□□□□□ -0.59
SMKR1H3BMG3 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 AL645728.2-201ENST00000641974 660 ntBASIC11.37□□□□□ -0.59
SMKR1H3BMG3 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 AC113367.3-201ENST00000508316 1912 ntBASIC11.37□□□□□ -0.59
SMKR1H3BMG3 AL031595.1-201ENST00000623969 4709 ntBASIC11.37□□□□□ -0.59
SMKR1H3BMG3 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SMKR1H3BMG3 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 CICP8-201ENST00000455800 2813 ntBASIC11.36□□□□□ -0.59
SMKR1H3BMG3 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
SMKR1H3BMG3 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms