Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC14.83□□□□□ -0.04
PCDHGA1Q9Y5H4 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 LRRC59-203ENST00000576448 1531 ntBASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 SERPINA13P-202ENST00000478994 924 ntBASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 TSACC-208ENST00000481479 741 ntTSL 2 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 AC245884.6-201ENST00000515672 1067 ntBASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 PCDHA14-201ENST00000506751 2298 ntBASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PCDHGA1Q9Y5H4 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 DEF8-202ENST00000418391 852 ntTSL 2 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 FAM8A4P-201ENST00000435433 1213 ntBASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 RN7SL720P-201ENST00000488178 304 ntBASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 NCK2-206ENST00000522586 490 ntTSL 5 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms