Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AL360270.3-201ENST00000609118 1348 ntBASIC16.55■□□□□ 0.24
SIX2Q9NPC8 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 AC007787.1-201ENST00000588095 1583 ntBASIC16.55■□□□□ 0.24
SIX2Q9NPC8 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 LILRP1-201ENST00000444199 1370 ntBASIC16.54■□□□□ 0.24
SIX2Q9NPC8 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 AC093525.8-201ENST00000624099 1342 ntBASIC16.54■□□□□ 0.24
SIX2Q9NPC8 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 UGT1A2P-201ENST00000454886 866 ntBASIC16.54■□□□□ 0.24
SIX2Q9NPC8 FAM86LP-201ENST00000478302 853 ntBASIC16.54■□□□□ 0.24
SIX2Q9NPC8 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 AC093214.1-201ENST00000511688 1107 ntBASIC16.54■□□□□ 0.24
SIX2Q9NPC8 AC026410.3-201ENST00000514280 936 ntBASIC16.54■□□□□ 0.24
SIX2Q9NPC8 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 GPALPP1-207ENST00000611650 899 ntBASIC16.54■□□□□ 0.24
SIX2Q9NPC8 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX2Q9NPC8 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.53■□□□□ 0.24
SIX2Q9NPC8 PMS2P2-201ENST00000425039 1128 ntBASIC16.53■□□□□ 0.24
SIX2Q9NPC8 HLA-K-203ENST00000430151 1046 ntBASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms