Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 MIR346-201ENST00000362234 95 ntBASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 KRT18P2-201ENST00000447938 1258 ntBASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 AL135744.1-201ENST00000565098 629 ntBASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 SLC6A6P1-201ENST00000413933 1850 ntBASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28BQ9BUN5 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 AC027612.1-201ENST00000445234 2395 ntBASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 AL356585.2-201ENST00000625078 2396 ntBASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 AL023775.1-201ENST00000454907 1746 ntBASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 DGCR9-201ENST00000609630 2415 ntBASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 TFAMP1-201ENST00000412727 736 ntBASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 AC092135.3-201ENST00000624151 1846 ntBASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 AP000845.1-201ENST00000581677 2131 ntBASIC15.1■□□□□ 0.01
CCDC28BQ9BUN5 AL928921.2-201ENST00000641325 2442 ntBASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 AL671277.1-201ENST00000429656 993 ntBASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 AP001005.1-201ENST00000571755 1248 ntBASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28BQ9BUN5 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms