Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 RPP21-221ENST00000428040 594 ntTSL 2 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 MIR6069-201ENST00000620069 79 ntBASIC11.66□□□□□ -0.54
LINC00477Q96M19 CICP24-201ENST00000605464 2705 ntBASIC11.66□□□□□ -0.54
LINC00477Q96M19 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 GOLGA8DP-202ENST00000341390 2184 ntBASIC11.66□□□□□ -0.54
LINC00477Q96M19 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 FGD5P1-202ENST00000614866 2498 ntBASIC11.65□□□□□ -0.54
LINC00477Q96M19 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 GRN-214ENST00000589265 1632 ntTSL 5 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 AMT-224ENST00000635808 1610 ntTSL 5 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 MIR574-201ENST00000385209 96 ntBASIC11.65□□□□□ -0.54
LINC00477Q96M19 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 PTK7-212ENST00000476760 902 ntTSL 2 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 GATD1-206ENST00000526325 756 ntTSL 5 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 PRR29-209ENST00000582540 967 ntTSL 2 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 AC007967.4-201ENST00000614700 386 ntBASIC11.65□□□□□ -0.54
LINC00477Q96M19 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00477Q96M19 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
LINC00477Q96M19 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.55
LINC00477Q96M19 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.55
LINC00477Q96M19 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.55
LINC00477Q96M19 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.55
LINC00477Q96M19 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
LINC00477Q96M19 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC11.64□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms