Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC132938.2-201ENST00000579188 680 ntBASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 AC027307.3-201ENST00000594262 1100 ntBASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 AL591163.1-201ENST00000641757 987 ntBASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 LINC02228-204ENST00000642115 2962 ntBASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 AC092127.1-201ENST00000567093 3455 ntBASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 AC006486.2-201ENST00000624246 2199 ntBASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 BANP-201ENST00000286122 2368 ntTSL 5 BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 AC126365.1-201ENST00000578585 1514 ntBASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 CLK3P2-201ENST00000427566 1453 ntBASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP4CQ96CF2 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 MYO15B-237ENST00000642007 4893 ntBASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 COX5BP8-201ENST00000416911 349 ntBASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 NME2P1-201ENST00000426182 414 ntBASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 INE1-201ENST00000456273 945 ntBASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 ELK1P1-201ENST00000485699 580 ntBASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 AC093004.1-201ENST00000508850 424 ntBASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms