Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 RPL18AP3-201ENST00000462885 528 ntBASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 AC009779.1-201ENST00000551138 283 ntBASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 AC105137.3-201ENST00000617588 984 ntBASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 AL645608.8-201ENST00000606034 2086 ntBASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMC1BQ8NDV3 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 AMT-204ENST00000427987 1646 ntTSL 5 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 AC239868.1-201ENST00000369385 493 ntBASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 Z69890.1-201ENST00000382990 339 ntBASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 AC026803.1-201ENST00000569130 274 ntBASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 HKR1-225ENST00000592168 566 ntTSL 4 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 AC134407.2-201ENST00000625089 1978 ntBASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMC1BQ8NDV3 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 AC011247.3-201ENST00000603297 438 ntBASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 OVCH1-AS1-204ENST00000641955 5529 ntBASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SMC1BQ8NDV3 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms