Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC20.01■□□□□ 0.79
USP54Q70EL1 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP54Q70EL1 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP54Q70EL1 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC20.01■□□□□ 0.79
USP54Q70EL1 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP54Q70EL1 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP54Q70EL1 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP54Q70EL1 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
USP54Q70EL1 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP54Q70EL1 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP54Q70EL1 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 RNA5SP359-201ENST00000364838 113 ntBASIC20■□□□□ 0.79
USP54Q70EL1 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC20■□□□□ 0.79
USP54Q70EL1 SCARNA21-201ENST00000517026 139 ntBASIC20■□□□□ 0.79
USP54Q70EL1 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC20■□□□□ 0.79
USP54Q70EL1 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC20■□□□□ 0.79
USP54Q70EL1 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
USP54Q70EL1 HPN-206ENST00000597419 1212 ntTSL 5 BASIC20■□□□□ 0.79
USP54Q70EL1 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC20■□□□□ 0.79
USP54Q70EL1 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC20■□□□□ 0.79
USP54Q70EL1 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
USP54Q70EL1 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 AC007292.2-201ENST00000593524 1812 ntBASIC20■□□□□ 0.79
USP54Q70EL1 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
USP54Q70EL1 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC20■□□□□ 0.79
USP54Q70EL1 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC20■□□□□ 0.79
USP54Q70EL1 RPL17P11-201ENST00000417593 544 ntBASIC20■□□□□ 0.79
USP54Q70EL1 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC20■□□□□ 0.79
USP54Q70EL1 RBM8B-201ENST00000555532 525 ntBASIC20■□□□□ 0.79
USP54Q70EL1 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC20■□□□□ 0.79
USP54Q70EL1 WASH3P-207ENST00000560956 1394 ntBASIC20■□□□□ 0.79
USP54Q70EL1 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 LINC01165-201ENST00000445190 1623 ntBASIC20■□□□□ 0.79
USP54Q70EL1 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC20■□□□□ 0.79
USP54Q70EL1 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
USP54Q70EL1 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC19.99■□□□□ 0.79
USP54Q70EL1 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
USP54Q70EL1 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 CAP2P1-201ENST00000557743 1390 ntBASIC19.99■□□□□ 0.79
USP54Q70EL1 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC19.99■□□□□ 0.79
USP54Q70EL1 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 Z97180.1-201ENST00000445173 988 ntBASIC19.99■□□□□ 0.79
USP54Q70EL1 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC19.99■□□□□ 0.79
USP54Q70EL1 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC19.99■□□□□ 0.79
USP54Q70EL1 AC012044.1-201ENST00000603431 297 ntBASIC19.99■□□□□ 0.79
USP54Q70EL1 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC19.99■□□□□ 0.79
USP54Q70EL1 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.99■□□□□ 0.79
USP54Q70EL1 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC19.99■□□□□ 0.79
USP54Q70EL1 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP54Q70EL1 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP54Q70EL1 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
USP54Q70EL1 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC19.98■□□□□ 0.79
USP54Q70EL1 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP54Q70EL1 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP54Q70EL1 KRT8P31-201ENST00000504812 1408 ntBASIC19.98■□□□□ 0.79
USP54Q70EL1 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USP54Q70EL1 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
USP54Q70EL1 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC19.98■□□□□ 0.79
USP54Q70EL1 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC19.98■□□□□ 0.79
USP54Q70EL1 AC008267.1-201ENST00000474858 1069 ntBASIC19.98■□□□□ 0.79
USP54Q70EL1 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC19.98■□□□□ 0.79
USP54Q70EL1 IQSEC3P1-201ENST00000538799 536 ntBASIC19.98■□□□□ 0.79
USP54Q70EL1 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
USP54Q70EL1 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP54Q70EL1 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.98■□□□□ 0.79
USP54Q70EL1 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC19.98■□□□□ 0.79
USP54Q70EL1 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
USP54Q70EL1 SALL4P5-201ENST00000419001 1760 ntBASIC19.98■□□□□ 0.79
USP54Q70EL1 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms