Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXA1P49639 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXA1P49639 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC12.96□□□□□ -0.33
HOXA1P49639 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
HOXA1P49639 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC12.96□□□□□ -0.34
HOXA1P49639 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
HOXA1P49639 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC12.96□□□□□ -0.34
HOXA1P49639 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
HOXA1P49639 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC12.96□□□□□ -0.34
HOXA1P49639 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
HOXA1P49639 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
HOXA1P49639 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
HOXA1P49639 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
HOXA1P49639 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.34
HOXA1P49639 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
HOXA1P49639 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC12.96□□□□□ -0.34
HOXA1P49639 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
HOXA1P49639 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
HOXA1P49639 AL928921.2-201ENST00000641325 2442 ntBASIC12.96□□□□□ -0.34
HOXA1P49639 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC12.95□□□□□ -0.34
HOXA1P49639 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
HOXA1P49639 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC12.95□□□□□ -0.34
HOXA1P49639 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
HOXA1P49639 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC12.95□□□□□ -0.34
HOXA1P49639 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
HOXA1P49639 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC12.95□□□□□ -0.34
HOXA1P49639 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC12.95□□□□□ -0.34
HOXA1P49639 GPI-205ENST00000586425 1799 ntTSL 5 BASIC12.95□□□□□ -0.34
HOXA1P49639 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
HOXA1P49639 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC12.95□□□□□ -0.34
HOXA1P49639 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC12.95□□□□□ -0.34
HOXA1P49639 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC12.95□□□□□ -0.34
HOXA1P49639 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
HOXA1P49639 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC12.95□□□□□ -0.34
HOXA1P49639 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
HOXA1P49639 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC12.95□□□□□ -0.34
HOXA1P49639 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC12.95□□□□□ -0.34
HOXA1P49639 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 CFL1-202ENST00000524553 860 ntTSL 2 BASIC12.95□□□□□ -0.34
HOXA1P49639 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC12.95□□□□□ -0.34
HOXA1P49639 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC12.95□□□□□ -0.34
HOXA1P49639 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
HOXA1P49639 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC12.95□□□□□ -0.34
HOXA1P49639 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
HOXA1P49639 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC12.95□□□□□ -0.34
HOXA1P49639 NUTM2HP-201ENST00000442076 2498 ntBASIC12.95□□□□□ -0.34
HOXA1P49639 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC12.95□□□□□ -0.34
HOXA1P49639 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXA1P49639 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC12.94□□□□□ -0.34
HOXA1P49639 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC12.94□□□□□ -0.34
HOXA1P49639 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC12.94□□□□□ -0.34
HOXA1P49639 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 AL359881.3-201ENST00000602640 1721 ntBASIC12.94□□□□□ -0.34
HOXA1P49639 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC12.94□□□□□ -0.34
HOXA1P49639 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
HOXA1P49639 AC011477.6-201ENST00000604980 1927 ntBASIC12.94□□□□□ -0.34
HOXA1P49639 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC12.94□□□□□ -0.34
HOXA1P49639 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC12.94□□□□□ -0.34
HOXA1P49639 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC12.94□□□□□ -0.34
HOXA1P49639 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms