Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.45■□□□□ 0.06
MSH3P20585 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.45■□□□□ 0.06
MSH3P20585 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 AC009090.5-201ENST00000624886 2285 ntBASIC15.45■□□□□ 0.06
MSH3P20585 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 PCDHA3-202ENST00000532566 4594 ntBASIC15.45■□□□□ 0.06
MSH3P20585 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.45■□□□□ 0.06
MSH3P20585 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.45■□□□□ 0.06
MSH3P20585 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.45■□□□□ 0.06
MSH3P20585 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.45■□□□□ 0.06
MSH3P20585 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.45■□□□□ 0.06
MSH3P20585 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.45■□□□□ 0.06
MSH3P20585 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.45■□□□□ 0.06
MSH3P20585 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
MSH3P20585 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC15.45■□□□□ 0.06
MSH3P20585 AL391825.1-201ENST00000457671 1364 ntBASIC15.45■□□□□ 0.06
MSH3P20585 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
MSH3P20585 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.45■□□□□ 0.06
MSH3P20585 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
MSH3P20585 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
MSH3P20585 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
MSH3P20585 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.44■□□□□ 0.06
MSH3P20585 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
MSH3P20585 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.44■□□□□ 0.06
MSH3P20585 AL109954.1-202ENST00000564051 2148 ntBASIC15.44■□□□□ 0.06
MSH3P20585 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
MSH3P20585 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
MSH3P20585 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.44■□□□□ 0.06
MSH3P20585 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
MSH3P20585 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.44■□□□□ 0.06
MSH3P20585 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
MSH3P20585 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.44■□□□□ 0.06
MSH3P20585 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.44■□□□□ 0.06
MSH3P20585 AL353779.1-201ENST00000434793 351 ntBASIC15.44■□□□□ 0.06
MSH3P20585 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 AC104596.2-201ENST00000512793 793 ntBASIC15.44■□□□□ 0.06
MSH3P20585 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.44■□□□□ 0.06
MSH3P20585 RRP7BP-205ENST00000566851 833 ntBASIC15.44■□□□□ 0.06
MSH3P20585 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
MSH3P20585 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.44■□□□□ 0.06
MSH3P20585 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.44■□□□□ 0.06
MSH3P20585 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.44■□□□□ 0.06
MSH3P20585 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.44■□□□□ 0.06
MSH3P20585 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
MSH3P20585 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.44■□□□□ 0.06
MSH3P20585 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
MSH3P20585 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
MSH3P20585 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.43■□□□□ 0.06
MSH3P20585 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.43■□□□□ 0.06
MSH3P20585 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC15.43■□□□□ 0.06
MSH3P20585 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.43■□□□□ 0.06
MSH3P20585 RN7SL399P-201ENST00000471648 279 ntBASIC15.43■□□□□ 0.06
MSH3P20585 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC15.43■□□□□ 0.06
MSH3P20585 MIR3197-201ENST00000582241 73 ntBASIC15.43■□□□□ 0.06
MSH3P20585 AC138761.1-201ENST00000584393 385 ntBASIC15.43■□□□□ 0.06
MSH3P20585 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.43■□□□□ 0.06
MSH3P20585 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC15.43■□□□□ 0.06
MSH3P20585 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.43■□□□□ 0.06
MSH3P20585 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms