Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A1P02462 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A1P02462 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A1P02462 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A1P02462 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A1P02462 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A1P02462 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A1P02462 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A1P02462 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A1P02462 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
COL4A1P02462 MIR769-201ENST00000390225 118 ntBASIC18.49■□□□□ 0.55
COL4A1P02462 MPV17-204ENST00000399052 749 ntTSL 4 BASIC18.49■□□□□ 0.55
COL4A1P02462 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC18.49■□□□□ 0.55
COL4A1P02462 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A1P02462 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A1P02462 AC125604.1-201ENST00000496255 707 ntBASIC18.49■□□□□ 0.55
COL4A1P02462 AC005740.2-201ENST00000511085 419 ntBASIC18.49■□□□□ 0.55
COL4A1P02462 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A1P02462 MIR3907-201ENST00000579424 151 ntBASIC18.49■□□□□ 0.55
COL4A1P02462 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A1P02462 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
COL4A1P02462 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC18.49■□□□□ 0.55
COL4A1P02462 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A1P02462 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A1P02462 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A1P02462 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC18.49■□□□□ 0.55
COL4A1P02462 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A1P02462 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A1P02462 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC18.49■□□□□ 0.55
COL4A1P02462 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC18.48■□□□□ 0.55
COL4A1P02462 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.48■□□□□ 0.55
COL4A1P02462 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
COL4A1P02462 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
COL4A1P02462 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
COL4A1P02462 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 RBM38-204ENST00000371219 760 ntTSL 2 BASIC18.48■□□□□ 0.55
COL4A1P02462 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC18.48■□□□□ 0.55
COL4A1P02462 CEP164P1-201ENST00000455142 418 ntBASIC18.48■□□□□ 0.55
COL4A1P02462 RPS2P36-201ENST00000456516 831 ntBASIC18.48■□□□□ 0.55
COL4A1P02462 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 COG4-212ENST00000564653 590 ntTSL 5 BASIC18.48■□□□□ 0.55
COL4A1P02462 MIR4722-201ENST00000578292 60 ntBASIC18.48■□□□□ 0.55
COL4A1P02462 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC18.48■□□□□ 0.55
COL4A1P02462 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC18.48■□□□□ 0.55
COL4A1P02462 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.48■□□□□ 0.55
COL4A1P02462 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.48■□□□□ 0.55
COL4A1P02462 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC18.48■□□□□ 0.55
COL4A1P02462 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 FAM90A7P-201ENST00000382628 1395 ntBASIC18.48■□□□□ 0.55
COL4A1P02462 FAM90A23P-201ENST00000400136 1395 ntBASIC18.48■□□□□ 0.55
COL4A1P02462 AMT-204ENST00000427987 1646 ntTSL 5 BASIC18.48■□□□□ 0.55
COL4A1P02462 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC18.48■□□□□ 0.55
COL4A1P02462 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A1P02462 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
COL4A1P02462 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC18.48■□□□□ 0.55
COL4A1P02462 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A1P02462 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A1P02462 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A1P02462 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC18.47■□□□□ 0.55
COL4A1P02462 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC18.47■□□□□ 0.55
COL4A1P02462 MSRA-203ENST00000441698 788 ntTSL 2 BASIC18.47■□□□□ 0.55
COL4A1P02462 AC073150.1-201ENST00000450406 1084 ntBASIC18.47■□□□□ 0.55
COL4A1P02462 RPL18P13-201ENST00000478088 569 ntBASIC18.47■□□□□ 0.55
COL4A1P02462 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
COL4A1P02462 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A1P02462 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A1P02462 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A1P02462 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
COL4A1P02462 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A1P02462 LILRP1-201ENST00000444199 1370 ntBASIC18.47■□□□□ 0.55
COL4A1P02462 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A1P02462 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A1P02462 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A1P02462 CELP-203ENST00000624767 2414 ntTSL 5 BASIC18.47■□□□□ 0.55
COL4A1P02462 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A1P02462 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC18.47■□□□□ 0.55
COL4A1P02462 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A1P02462 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A1P02462 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A1P02462 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A1P02462 ISCA2P1-201ENST00000425548 448 ntBASIC18.47■□□□□ 0.55
COL4A1P02462 AC106794.1-201ENST00000506935 792 ntBASIC18.47■□□□□ 0.55
COL4A1P02462 PRKXP1-201ENST00000561423 1122 ntBASIC18.47■□□□□ 0.55
COL4A1P02462 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
COL4A1P02462 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms