Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 AL607033.1-201ENST00000623900 1599 ntBASIC14.79□□□□□ -0.04
CCDC88CQ9P219 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 AC106886.1-201ENST00000568660 600 ntBASIC14.79□□□□□ -0.04
CCDC88CQ9P219 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 PDIA3P1-201ENST00000471856 1510 ntBASIC14.79□□□□□ -0.04
CCDC88CQ9P219 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC88CQ9P219 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 AC234783.1-201ENST00000441761 496 ntBASIC14.78□□□□□ -0.04
CCDC88CQ9P219 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 AC104596.2-201ENST00000512793 793 ntBASIC14.78□□□□□ -0.04
CCDC88CQ9P219 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 AC244107.1-201ENST00000442033 332 ntBASIC14.78□□□□□ -0.04
CCDC88CQ9P219 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 AP005482.1-201ENST00000563722 1273 ntBASIC14.78□□□□□ -0.04
CCDC88CQ9P219 AC244669.2-201ENST00000612320 853 ntBASIC14.78□□□□□ -0.04
CCDC88CQ9P219 MIR6752-201ENST00000618442 71 ntBASIC14.78□□□□□ -0.04
CCDC88CQ9P219 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 AC018665.1-201ENST00000622927 1362 ntBASIC14.78□□□□□ -0.04
CCDC88CQ9P219 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.78□□□□□ -0.04
CCDC88CQ9P219 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC88CQ9P219 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC88CQ9P219 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC88CQ9P219 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC88CQ9P219 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms