Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 AC136621.1-201ENST00000624017 2304 ntBASIC13.79□□□□□ -0.2
SKA3Q8IX90 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 NAA60-208ENST00000570819 833 ntTSL 2 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 INO80C-206ENST00000586489 594 ntTSL 3 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 AC087481.3-201ENST00000602886 1894 ntBASIC13.78□□□□□ -0.2
SKA3Q8IX90 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SKA3Q8IX90 LCK-206ENST00000373564 2137 ntTSL 5 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 SSR4P1-203ENST00000599569 2260 ntBASIC13.78□□□□□ -0.2
SKA3Q8IX90 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC13.78□□□□□ -0.2
SKA3Q8IX90 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
SKA3Q8IX90 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC13.77□□□□□ -0.2
SKA3Q8IX90 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.2
SKA3Q8IX90 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
SKA3Q8IX90 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
SKA3Q8IX90 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
SKA3Q8IX90 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.2
SKA3Q8IX90 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
SKA3Q8IX90 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
SKA3Q8IX90 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.2
SKA3Q8IX90 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
SKA3Q8IX90 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SKA3Q8IX90 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SKA3Q8IX90 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SKA3Q8IX90 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SKA3Q8IX90 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SKA3Q8IX90 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SKA3Q8IX90 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SKA3Q8IX90 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SKA3Q8IX90 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 AC015922.1-201ENST00000421102 1152 ntBASIC13.77□□□□□ -0.21
SKA3Q8IX90 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms