Protein–RNA interactions for Protein: Q5UIP0

RIF1, Telomere-associated protein RIF1, humanhuman

Known RBP Predictions only

Length 2,472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1Q5UIP0 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 AC093752.3-201ENST00000567343 901 ntBASIC14.78□□□□□ -0.04
RIF1Q5UIP0 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 AP001184.1-201ENST00000637936 376 ntBASIC14.78□□□□□ -0.04
RIF1Q5UIP0 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 FKBP4P6-201ENST00000457486 1332 ntBASIC14.78□□□□□ -0.04
RIF1Q5UIP0 AL008718.2-201ENST00000609206 1313 ntBASIC14.78□□□□□ -0.04
RIF1Q5UIP0 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
RIF1Q5UIP0 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 TSPY25P-201ENST00000429463 745 ntBASIC14.77□□□□□ -0.04
RIF1Q5UIP0 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 AC055811.3-201ENST00000584952 686 ntBASIC14.77□□□□□ -0.04
RIF1Q5UIP0 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 GNE-204ENST00000539208 2190 ntTSL 2 BASIC14.77□□□□□ -0.04
RIF1Q5UIP0 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 AP000358.1-201ENST00000456260 156 ntBASIC14.77□□□□□ -0.05
RIF1Q5UIP0 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 AC027237.1-201ENST00000560942 655 ntBASIC14.77□□□□□ -0.05
RIF1Q5UIP0 AC018846.1-201ENST00000568231 183 ntBASIC14.77□□□□□ -0.05
RIF1Q5UIP0 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC14.77□□□□□ -0.05
RIF1Q5UIP0 INE2-201ENST00000630399 1874 ntBASIC14.77□□□□□ -0.05
RIF1Q5UIP0 AP000593.2-201ENST00000542775 1433 ntBASIC14.77□□□□□ -0.05
RIF1Q5UIP0 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 CLUHP2-201ENST00000426660 1303 ntBASIC14.77□□□□□ -0.05
RIF1Q5UIP0 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC14.77□□□□□ -0.05
RIF1Q5UIP0 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 RPL14-203ENST00000416518 812 ntTSL 3 BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 AREG-202ENST00000502307 956 ntTSL 5 BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 KRT18P9-201ENST00000604826 1300 ntBASIC14.76□□□□□ -0.05
RIF1Q5UIP0 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RIF1Q5UIP0 RNF216P1-203ENST00000404404 2427 ntBASIC14.76□□□□□ -0.05
RIF1Q5UIP0 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms