Protein–RNA interactions for Protein: P68431

HIST1H3A, Histone H3.1, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H3AP68431 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.57□□□□□ -0.24
HIST1H3AP68431 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H3AP68431 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
HIST1H3AP68431 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H3AP68431 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H3AP68431 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.57□□□□□ -0.24
HIST1H3AP68431 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
HIST1H3AP68431 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC13.57□□□□□ -0.24
HIST1H3AP68431 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H3AP68431 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
HIST1H3AP68431 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H3AP68431 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.57□□□□□ -0.24
HIST1H3AP68431 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H3AP68431 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H3AP68431 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
HIST1H3AP68431 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC13.57□□□□□ -0.24
HIST1H3AP68431 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H3AP68431 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HIST1H3AP68431 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.56□□□□□ -0.24
HIST1H3AP68431 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 PKIG-203ENST00000372887 769 ntTSL 3 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 PNMT-202ENST00000394246 821 ntTSL 2 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 RHOA-206ENST00000454011 889 ntTSL 2 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 SRD5A3P1-201ENST00000603021 949 ntBASIC13.56□□□□□ -0.24
HIST1H3AP68431 AC008738.7-201ENST00000609744 511 ntBASIC13.56□□□□□ -0.24
HIST1H3AP68431 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 AC004840.1-201ENST00000636359 365 ntBASIC13.56□□□□□ -0.24
HIST1H3AP68431 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 AC022144.1-201ENST00000602255 1580 ntBASIC13.56□□□□□ -0.24
HIST1H3AP68431 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HIST1H3AP68431 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
HIST1H3AP68431 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HIST1H3AP68431 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIST1H3AP68431 DBET-201ENST00000630918 3363 ntBASIC13.55□□□□□ -0.24
HIST1H3AP68431 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIST1H3AP68431 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIST1H3AP68431 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.55□□□□□ -0.24
HIST1H3AP68431 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIST1H3AP68431 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIST1H3AP68431 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.55□□□□□ -0.24
HIST1H3AP68431 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIST1H3AP68431 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HIST1H3AP68431 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
HIST1H3AP68431 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HIST1H3AP68431 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIST1H3AP68431 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC13.55□□□□□ -0.24
HIST1H3AP68431 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIST1H3AP68431 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HIST1H3AP68431 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC13.55□□□□□ -0.24
HIST1H3AP68431 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC13.55□□□□□ -0.24
HIST1H3AP68431 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HIST1H3AP68431 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC13.55□□□□□ -0.24
HIST1H3AP68431 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC13.55□□□□□ -0.24
HIST1H3AP68431 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HIST1H3AP68431 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC13.55□□□□□ -0.24
HIST1H3AP68431 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms