Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.28■□□□□ 0.04
PKNOX1P55347 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.28■□□□□ 0.04
PKNOX1P55347 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.28■□□□□ 0.04
PKNOX1P55347 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
PKNOX1P55347 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 SBF1P1-201ENST00000444527 5631 ntBASIC15.28■□□□□ 0.04
PKNOX1P55347 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 AC005840.4-201ENST00000541242 2494 ntBASIC15.28■□□□□ 0.04
PKNOX1P55347 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.28■□□□□ 0.04
PKNOX1P55347 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
PKNOX1P55347 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
PKNOX1P55347 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PKNOX1P55347 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PKNOX1P55347 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKNOX1P55347 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKNOX1P55347 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKNOX1P55347 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKNOX1P55347 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKNOX1P55347 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKNOX1P55347 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKNOX1P55347 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.27■□□□□ 0.04
PKNOX1P55347 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKNOX1P55347 RDX-218ENST00000544551 4117 ntTSL 2 BASIC15.27■□□□□ 0.04
PKNOX1P55347 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.27■□□□□ 0.04
PKNOX1P55347 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKNOX1P55347 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKNOX1P55347 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKNOX1P55347 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.27■□□□□ 0.04
PKNOX1P55347 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
PKNOX1P55347 GRK6P1-201ENST00000400595 1711 ntBASIC15.27■□□□□ 0.04
PKNOX1P55347 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PKNOX1P55347 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKNOX1P55347 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKNOX1P55347 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
PKNOX1P55347 AL022342.1-201ENST00000400363 863 ntBASIC15.27■□□□□ 0.04
PKNOX1P55347 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
PKNOX1P55347 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.27■□□□□ 0.04
PKNOX1P55347 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.27■□□□□ 0.04
PKNOX1P55347 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.27■□□□□ 0.04
PKNOX1P55347 BANF1P1-201ENST00000553684 263 ntBASIC15.27■□□□□ 0.04
PKNOX1P55347 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
PKNOX1P55347 AL513210.1-201ENST00000629608 234 ntBASIC15.27■□□□□ 0.04
PKNOX1P55347 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
PKNOX1P55347 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PKNOX1P55347 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.27■□□□□ 0.03
PKNOX1P55347 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
PKNOX1P55347 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.03
PKNOX1P55347 AJ011931.1-201ENST00000618749 2492 ntBASIC15.27■□□□□ 0.03
PKNOX1P55347 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
PKNOX1P55347 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.27■□□□□ 0.03
PKNOX1P55347 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PKNOX1P55347 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PKNOX1P55347 AC023024.2-201ENST00000623561 1993 ntBASIC15.27■□□□□ 0.03
PKNOX1P55347 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PKNOX1P55347 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.27■□□□□ 0.03
PKNOX1P55347 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
PKNOX1P55347 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.03
PKNOX1P55347 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PKNOX1P55347 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.27■□□□□ 0.03
PKNOX1P55347 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.27■□□□□ 0.03
PKNOX1P55347 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PKNOX1P55347 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
PKNOX1P55347 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PKNOX1P55347 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PKNOX1P55347 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.27■□□□□ 0.03
PKNOX1P55347 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PKNOX1P55347 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.27■□□□□ 0.03
PKNOX1P55347 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.27■□□□□ 0.03
PKNOX1P55347 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PKNOX1P55347 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
PKNOX1P55347 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
PKNOX1P55347 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
PKNOX1P55347 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
PKNOX1P55347 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.26■□□□□ 0.03
PKNOX1P55347 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PKNOX1P55347 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.26■□□□□ 0.03
PKNOX1P55347 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.26■□□□□ 0.03
PKNOX1P55347 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PKNOX1P55347 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.26■□□□□ 0.03
PKNOX1P55347 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PKNOX1P55347 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.26■□□□□ 0.03
PKNOX1P55347 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.26■□□□□ 0.03
PKNOX1P55347 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.26■□□□□ 0.03
PKNOX1P55347 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PKNOX1P55347 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PKNOX1P55347 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.26■□□□□ 0.03
PKNOX1P55347 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PKNOX1P55347 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms