Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 USP28-214ENST00000545540 3431 ntTSL 2 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 AC023908.3-201ENST00000564211 3047 ntBASIC11.88□□□□□ -0.51
HLA-DMBP28068 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 AL139400.1-201ENST00000366220 510 ntBASIC11.88□□□□□ -0.51
HLA-DMBP28068 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 HNRNPFP1-201ENST00000391730 1133 ntBASIC11.88□□□□□ -0.51
HLA-DMBP28068 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 KRT18P32-201ENST00000424695 1287 ntBASIC11.88□□□□□ -0.51
HLA-DMBP28068 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 CYMP-203ENST00000474680 1263 ntBASIC11.88□□□□□ -0.51
HLA-DMBP28068 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 ALG1L8P-201ENST00000533887 760 ntBASIC11.88□□□□□ -0.51
HLA-DMBP28068 TSFM-210ENST00000550559 897 ntTSL 5 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 AC105021.1-202ENST00000570572 669 ntBASIC11.88□□□□□ -0.51
HLA-DMBP28068 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 LSM12-202ENST00000585388 942 ntTSL 3 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 AC003101.2-201ENST00000612557 442 ntBASIC11.88□□□□□ -0.51
HLA-DMBP28068 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 ORC5-208ENST00000626700 344 ntTSL 3 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 LINC00628-201ENST00000628516 1289 ntBASIC11.88□□□□□ -0.51
HLA-DMBP28068 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC11.88□□□□□ -0.51
HLA-DMBP28068 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
HLA-DMBP28068 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 CICP11-201ENST00000434745 2827 ntBASIC11.87□□□□□ -0.51
HLA-DMBP28068 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms