Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
COL8A1P27658 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC13.53□□□□□ -0.24
COL8A1P27658 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL8A1P27658 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
COL8A1P27658 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
COL8A1P27658 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC13.52□□□□□ -0.24
COL8A1P27658 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
COL8A1P27658 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.24
COL8A1P27658 UBALD1-205ENST00000590891 2641 ntBASIC13.52□□□□□ -0.24
COL8A1P27658 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC13.52□□□□□ -0.24
COL8A1P27658 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
COL8A1P27658 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC13.52□□□□□ -0.24
COL8A1P27658 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
COL8A1P27658 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
COL8A1P27658 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC13.52□□□□□ -0.25
COL8A1P27658 TPM3P8-201ENST00000330554 643 ntBASIC13.52□□□□□ -0.25
COL8A1P27658 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 ATP6V1G1-201ENST00000374050 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 LST1-205ENST00000376089 680 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 LST1-206ENST00000376090 689 ntTSL 2 BASIC13.52□□□□□ -0.25
COL8A1P27658 LST1-208ENST00000376093 648 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 LST1-209ENST00000376096 565 ntTSL 2 BASIC13.52□□□□□ -0.25
COL8A1P27658 LST1-210ENST00000376099 610 ntTSL 2 BASIC13.52□□□□□ -0.25
COL8A1P27658 LST1-212ENST00000396101 459 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 AL627389.1-201ENST00000413508 1182 ntBASIC13.52□□□□□ -0.25
COL8A1P27658 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
COL8A1P27658 LST1-214ENST00000418507 726 ntTSL 2 BASIC13.52□□□□□ -0.25
COL8A1P27658 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC13.52□□□□□ -0.25
COL8A1P27658 LST1-217ENST00000438075 764 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC13.52□□□□□ -0.25
COL8A1P27658 AC234782.1-201ENST00000451950 919 ntBASIC13.52□□□□□ -0.25
COL8A1P27658 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC13.52□□□□□ -0.25
COL8A1P27658 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC13.52□□□□□ -0.25
COL8A1P27658 IGLV3-15-201ENST00000518356 244 ntBASIC13.52□□□□□ -0.25
COL8A1P27658 AC022217.1-201ENST00000521069 738 ntBASIC13.52□□□□□ -0.25
COL8A1P27658 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC13.52□□□□□ -0.25
COL8A1P27658 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC13.52□□□□□ -0.25
COL8A1P27658 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC13.52□□□□□ -0.25
COL8A1P27658 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC13.52□□□□□ -0.25
COL8A1P27658 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC13.52□□□□□ -0.25
COL8A1P27658 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC13.52□□□□□ -0.25
COL8A1P27658 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC13.52□□□□□ -0.25
COL8A1P27658 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC13.52□□□□□ -0.25
COL8A1P27658 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
COL8A1P27658 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC13.52□□□□□ -0.25
COL8A1P27658 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.52□□□□□ -0.25
COL8A1P27658 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL8A1P27658 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC13.51□□□□□ -0.25
COL8A1P27658 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC13.51□□□□□ -0.25
COL8A1P27658 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
COL8A1P27658 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC13.51□□□□□ -0.25
COL8A1P27658 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC13.51□□□□□ -0.25
COL8A1P27658 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC13.51□□□□□ -0.25
COL8A1P27658 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC13.51□□□□□ -0.25
COL8A1P27658 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 VILL-207ENST00000465644 1857 ntTSL 5 BASIC13.51□□□□□ -0.25
COL8A1P27658 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
COL8A1P27658 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.51□□□□□ -0.25
COL8A1P27658 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
COL8A1P27658 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL8A1P27658 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC13.51□□□□□ -0.25
COL8A1P27658 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
COL8A1P27658 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
COL8A1P27658 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms