Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CXCL1P09341 FXN-203ENST00000396366 922 ntTSL 2 BASIC12.09□□□□□ -0.47
CXCL1P09341 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CXCL1P09341 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CXCL1P09341 AL031133.1-201ENST00000406807 723 ntBASIC12.09□□□□□ -0.47
CXCL1P09341 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC12.09□□□□□ -0.47
CXCL1P09341 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
CXCL1P09341 PMS2P1-201ENST00000431037 1228 ntBASIC12.09□□□□□ -0.47
CXCL1P09341 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC12.09□□□□□ -0.47
CXCL1P09341 ARTN-206ENST00000472435 402 ntTSL 3 BASIC12.09□□□□□ -0.47
CXCL1P09341 BET1L-206ENST00000486280 665 ntTSL 3 BASIC12.09□□□□□ -0.47
CXCL1P09341 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC12.09□□□□□ -0.47
CXCL1P09341 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
CXCL1P09341 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC12.09□□□□□ -0.47
CXCL1P09341 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
CXCL1P09341 AL591684.3-201ENST00000605187 298 ntBASIC12.09□□□□□ -0.47
CXCL1P09341 AC116407.4-201ENST00000623319 1061 ntBASIC12.09□□□□□ -0.47
CXCL1P09341 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC12.09□□□□□ -0.47
CXCL1P09341 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC12.09□□□□□ -0.47
CXCL1P09341 AL805961.1-202ENST00000641562 540 ntBASIC12.09□□□□□ -0.47
CXCL1P09341 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
CXCL1P09341 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC12.09□□□□□ -0.47
CXCL1P09341 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
CXCL1P09341 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CXCL1P09341 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC12.09□□□□□ -0.47
CXCL1P09341 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CXCL1P09341 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
CXCL1P09341 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CXCL1P09341 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
CXCL1P09341 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC12.09□□□□□ -0.47
CXCL1P09341 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
CXCL1P09341 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC12.09□□□□□ -0.47
CXCL1P09341 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CXCL1P09341 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC12.09□□□□□ -0.47
CXCL1P09341 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CXCL1P09341 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
CXCL1P09341 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
CXCL1P09341 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
CXCL1P09341 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
CXCL1P09341 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.47
CXCL1P09341 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC12.08□□□□□ -0.47
CXCL1P09341 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC12.08□□□□□ -0.47
CXCL1P09341 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.47
CXCL1P09341 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC12.08□□□□□ -0.48
CXCL1P09341 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
CXCL1P09341 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC12.08□□□□□ -0.48
CXCL1P09341 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 AC004241.5-201ENST00000623870 2448 ntBASIC12.08□□□□□ -0.48
CXCL1P09341 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
CXCL1P09341 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC12.08□□□□□ -0.48
CXCL1P09341 MED16-201ENST00000269814 1199 ntTSL 5 BASIC12.08□□□□□ -0.48
CXCL1P09341 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC12.08□□□□□ -0.48
CXCL1P09341 GUK1-204ENST00000366721 689 ntTSL 3 BASIC12.08□□□□□ -0.48
CXCL1P09341 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC12.08□□□□□ -0.48
CXCL1P09341 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC12.08□□□□□ -0.48
CXCL1P09341 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 KRT16P4-201ENST00000453883 522 ntBASIC12.08□□□□□ -0.48
CXCL1P09341 BX005266.1-201ENST00000473402 457 ntBASIC12.08□□□□□ -0.48
CXCL1P09341 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC12.08□□□□□ -0.48
CXCL1P09341 PNN-202ENST00000553331 656 ntTSL 3 BASIC12.08□□□□□ -0.48
CXCL1P09341 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC12.08□□□□□ -0.48
CXCL1P09341 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC12.08□□□□□ -0.48
CXCL1P09341 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 AC064862.7-201ENST00000604520 867 ntBASIC12.08□□□□□ -0.48
CXCL1P09341 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
CXCL1P09341 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.48
CXCL1P09341 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 AC015802.1-201ENST00000588104 1449 ntBASIC12.08□□□□□ -0.48
CXCL1P09341 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC12.08□□□□□ -0.48
CXCL1P09341 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC12.08□□□□□ -0.48
CXCL1P09341 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 AC020658.7-201ENST00000624274 2442 ntBASIC12.08□□□□□ -0.48
CXCL1P09341 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC12.08□□□□□ -0.48
CXCL1P09341 AC129492.6-201ENST00000611383 1305 ntBASIC12.08□□□□□ -0.48
CXCL1P09341 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC12.08□□□□□ -0.48
CXCL1P09341 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
CXCL1P09341 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC12.07□□□□□ -0.48
CXCL1P09341 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC12.07□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms