Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
LDLRP01130 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.09■□□□□ 0.01
LDLRP01130 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 AC232323.1-201ENST00000540724 2099 ntBASIC15.09■□□□□ 0.01
LDLRP01130 REXO1L5P-201ENST00000622260 2098 ntBASIC15.09■□□□□ 0.01
LDLRP01130 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.09■□□□□ 0.01
LDLRP01130 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
LDLRP01130 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.09■□□□□ 0.01
LDLRP01130 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.09■□□□□ 0.01
LDLRP01130 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.09■□□□□ 0.01
LDLRP01130 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.09■□□□□ 0.01
LDLRP01130 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.09■□□□□ 0.01
LDLRP01130 AC004890.2-204ENST00000481968 304 ntBASIC15.09■□□□□ 0.01
LDLRP01130 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.09■□□□□ 0.01
LDLRP01130 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC15.09■□□□□ 0.01
LDLRP01130 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
LDLRP01130 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.09■□□□□ 0.01
LDLRP01130 MIR6080-201ENST00000617359 66 ntBASIC15.09■□□□□ 0.01
LDLRP01130 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.09■□□□□ 0.01
LDLRP01130 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
LDLRP01130 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LDLRP01130 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.09■□□□□ 0.01
LDLRP01130 AGAP7P-201ENST00000582299 2062 ntBASIC15.08■□□□□ 0.01
LDLRP01130 AGAP14-201ENST00000624701 2060 ntBASIC15.08■□□□□ 0.01
LDLRP01130 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
LDLRP01130 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
LDLRP01130 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
LDLRP01130 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0.01
LDLRP01130 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
LDLRP01130 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.08■□□□□ 0.01
LDLRP01130 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
LDLRP01130 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
LDLRP01130 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0.01
LDLRP01130 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
LDLRP01130 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0.01
LDLRP01130 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0.01
LDLRP01130 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.08■□□□□ 0
LDLRP01130 AC007191.1-201ENST00000623179 2995 ntBASIC15.08■□□□□ 0
LDLRP01130 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
LDLRP01130 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.08■□□□□ 0
LDLRP01130 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
LDLRP01130 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.08■□□□□ 0
LDLRP01130 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.08■□□□□ 0
LDLRP01130 AC241585.1-201ENST00000433527 519 ntBASIC15.08■□□□□ 0
LDLRP01130 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.08■□□□□ 0
LDLRP01130 KRT17P7-201ENST00000451704 1104 ntBASIC15.08■□□□□ 0
LDLRP01130 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC15.08■□□□□ 0
LDLRP01130 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC15.08■□□□□ 0
LDLRP01130 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.08■□□□□ 0
LDLRP01130 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.08■□□□□ 0
LDLRP01130 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.08■□□□□ 0
LDLRP01130 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.08■□□□□ 0
LDLRP01130 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.08■□□□□ 0
LDLRP01130 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 AL390755.1-201ENST00000623716 2027 ntBASIC15.08■□□□□ 0
LDLRP01130 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.08■□□□□ 0
LDLRP01130 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.08■□□□□ 0
LDLRP01130 AC007686.3-201ENST00000619017 3487 ntBASIC15.08■□□□□ 0
LDLRP01130 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
LDLRP01130 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LDLRP01130 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.07■□□□□ 0
LDLRP01130 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.07■□□□□ 0
LDLRP01130 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms