Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.92□□□□□ -0.02
SEMA3DO95025 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.92□□□□□ -0.02
SEMA3DO95025 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.92□□□□□ -0.02
SEMA3DO95025 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
SEMA3DO95025 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.92□□□□□ -0.02
SEMA3DO95025 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.92□□□□□ -0.02
SEMA3DO95025 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.92□□□□□ -0.02
SEMA3DO95025 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 MIR943-201ENST00000401286 94 ntBASIC14.92□□□□□ -0.02
SEMA3DO95025 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.92□□□□□ -0.02
SEMA3DO95025 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.92□□□□□ -0.02
SEMA3DO95025 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
SEMA3DO95025 AC241585.1-201ENST00000433527 519 ntBASIC14.92□□□□□ -0.02
SEMA3DO95025 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.92□□□□□ -0.02
SEMA3DO95025 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.92□□□□□ -0.02
SEMA3DO95025 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.92□□□□□ -0.02
SEMA3DO95025 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14.92□□□□□ -0.02
SEMA3DO95025 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.92□□□□□ -0.02
SEMA3DO95025 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.92□□□□□ -0.02
SEMA3DO95025 AL590560.3-201ENST00000623350 461 ntBASIC14.92□□□□□ -0.02
SEMA3DO95025 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
SEMA3DO95025 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
SEMA3DO95025 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.92□□□□□ -0.02
SEMA3DO95025 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.92□□□□□ -0.02
SEMA3DO95025 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SEMA3DO95025 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.92□□□□□ -0.02
SEMA3DO95025 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
SEMA3DO95025 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SEMA3DO95025 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
SEMA3DO95025 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
SEMA3DO95025 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.91□□□□□ -0.02
SEMA3DO95025 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
SEMA3DO95025 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.91□□□□□ -0.02
SEMA3DO95025 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 BTBD7P1-201ENST00000447253 1453 ntBASIC14.91□□□□□ -0.02
SEMA3DO95025 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SEMA3DO95025 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
SEMA3DO95025 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
SEMA3DO95025 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.91□□□□□ -0.02
SEMA3DO95025 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.91□□□□□ -0.02
SEMA3DO95025 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.91□□□□□ -0.02
SEMA3DO95025 KRT18P64-201ENST00000434946 1219 ntBASIC14.91□□□□□ -0.02
SEMA3DO95025 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.91□□□□□ -0.02
SEMA3DO95025 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.91□□□□□ -0.02
SEMA3DO95025 LINC01115-203ENST00000606068 577 ntBASIC14.91□□□□□ -0.02
SEMA3DO95025 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
SEMA3DO95025 AL109936.8-201ENST00000641772 604 ntBASIC14.91□□□□□ -0.02
SEMA3DO95025 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SEMA3DO95025 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
SEMA3DO95025 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
SEMA3DO95025 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
SEMA3DO95025 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.91□□□□□ -0.02
SEMA3DO95025 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
SEMA3DO95025 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 AC067930.6-201ENST00000623257 4947 ntBASIC14.91□□□□□ -0.02
SEMA3DO95025 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.91□□□□□ -0.02
SEMA3DO95025 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SEMA3DO95025 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
SEMA3DO95025 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
SEMA3DO95025 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
SEMA3DO95025 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms