Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4AQ9UN37 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4AQ9UN37 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4AQ9UN37 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.12■□□□□ 0.01
VPS4AQ9UN37 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 AC105250.1-201ENST00000509378 2057 ntBASIC15.12■□□□□ 0.01
VPS4AQ9UN37 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 AL691432.1-201ENST00000596308 1422 ntBASIC15.12■□□□□ 0.01
VPS4AQ9UN37 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 AL353779.1-201ENST00000434793 351 ntBASIC15.12■□□□□ 0.01
VPS4AQ9UN37 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 AC140912.1-201ENST00000577171 1054 ntBASIC15.12■□□□□ 0.01
VPS4AQ9UN37 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.12■□□□□ 0.01
VPS4AQ9UN37 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.12■□□□□ 0.01
VPS4AQ9UN37 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
VPS4AQ9UN37 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 AC006486.2-201ENST00000624246 2199 ntBASIC15.11■□□□□ 0.01
VPS4AQ9UN37 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 TSSK5P-201ENST00000423978 907 ntBASIC15.11■□□□□ 0.01
VPS4AQ9UN37 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms