Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTR9Q6PD62 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CTR9Q6PD62 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTR9Q6PD62 MGST3-203ENST00000367885 680 ntTSL 2 BASIC18.4■□□□□ 0.54
CTR9Q6PD62 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC18.4■□□□□ 0.54
CTR9Q6PD62 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTR9Q6PD62 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC18.4■□□□□ 0.54
CTR9Q6PD62 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTR9Q6PD62 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CTR9Q6PD62 CROCCP4-201ENST00000457096 498 ntBASIC18.4■□□□□ 0.54
CTR9Q6PD62 GPR53P-205ENST00000457298 1084 ntBASIC18.4■□□□□ 0.54
CTR9Q6PD62 ACA64.2-201ENST00000459014 129 ntBASIC18.4■□□□□ 0.54
CTR9Q6PD62 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC18.4■□□□□ 0.54
CTR9Q6PD62 AP001063.1-201ENST00000568332 529 ntBASIC18.4■□□□□ 0.54
CTR9Q6PD62 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC18.4■□□□□ 0.54
CTR9Q6PD62 AC233724.13-201ENST00000598383 410 ntBASIC18.4■□□□□ 0.54
CTR9Q6PD62 AL512343.1-201ENST00000605837 169 ntBASIC18.4■□□□□ 0.54
CTR9Q6PD62 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTR9Q6PD62 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CTR9Q6PD62 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTR9Q6PD62 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CTR9Q6PD62 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTR9Q6PD62 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CTR9Q6PD62 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
CTR9Q6PD62 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC18.4■□□□□ 0.54
CTR9Q6PD62 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC18.4■□□□□ 0.54
CTR9Q6PD62 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CTR9Q6PD62 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
CTR9Q6PD62 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
CTR9Q6PD62 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CTR9Q6PD62 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
CTR9Q6PD62 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CTR9Q6PD62 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.39■□□□□ 0.54
CTR9Q6PD62 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CTR9Q6PD62 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 AP001889.1-201ENST00000525414 633 ntBASIC18.39■□□□□ 0.53
CTR9Q6PD62 AP001582.1-201ENST00000525856 295 ntBASIC18.39■□□□□ 0.53
CTR9Q6PD62 AC068587.3-201ENST00000526613 355 ntBASIC18.39■□□□□ 0.53
CTR9Q6PD62 RAB43P1-201ENST00000561790 589 ntBASIC18.39■□□□□ 0.53
CTR9Q6PD62 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 ATF5-205ENST00000600336 682 ntTSL 2 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 METTL26-214ENST00000614890 801 ntTSL 3 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 STK33-217ENST00000534493 1895 ntTSL 2 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CTR9Q6PD62 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTR9Q6PD62 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC18.38■□□□□ 0.53
CTR9Q6PD62 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
CTR9Q6PD62 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.38■□□□□ 0.53
CTR9Q6PD62 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTR9Q6PD62 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTR9Q6PD62 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CTR9Q6PD62 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.38■□□□□ 0.53
CTR9Q6PD62 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CTR9Q6PD62 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
CTR9Q6PD62 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTR9Q6PD62 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTR9Q6PD62 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTR9Q6PD62 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC18.38■□□□□ 0.53
CTR9Q6PD62 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC18.38■□□□□ 0.53
CTR9Q6PD62 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
CTR9Q6PD62 BAATP1-201ENST00000412284 1225 ntBASIC18.38■□□□□ 0.53
CTR9Q6PD62 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC18.38■□□□□ 0.53
CTR9Q6PD62 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms