Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 AC009779.1-201ENST00000551138 283 ntBASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 AL136295.7-201ENST00000619226 1200 ntBASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 RPL18P13-201ENST00000478088 569 ntBASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 RN7SL67P-201ENST00000492147 296 ntBASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 SAMD11P1-201ENST00000571429 661 ntBASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 AIRN-201ENST00000601203 4374 ntBASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 AC026691.1-201ENST00000602502 2017 ntBASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 RN7SKP175-201ENST00000408472 289 ntBASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 CMC1-204ENST00000423894 549 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 PIN4P1-201ENST00000451079 396 ntBASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 STUB1-204ENST00000564370 875 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 GMFG-209ENST00000600322 622 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 AC087045.2-201ENST00000606279 1003 ntBASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.6■□□□□ 0.57
CCDC88AQ3V6T2 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 CAP2P1-201ENST00000557743 1390 ntBASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 AL139008.1-201ENST00000437894 228 ntBASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 AC127383.1-201ENST00000444697 1800 ntBASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC88AQ3V6T2 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 RPL5P21-201ENST00000404620 815 ntBASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 MIR1227-201ENST00000408484 88 ntBASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC18.58■□□□□ 0.57
CCDC88AQ3V6T2 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms