Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
MRE11P49959 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MRE11P49959 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
MRE11P49959 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MRE11P49959 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC18.22■□□□□ 0.51
MRE11P49959 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MRE11P49959 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MRE11P49959 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
MRE11P49959 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.22■□□□□ 0.51
MRE11P49959 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MRE11P49959 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MRE11P49959 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MRE11P49959 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MRE11P49959 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.22■□□□□ 0.51
MRE11P49959 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC18.22■□□□□ 0.51
MRE11P49959 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MRE11P49959 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MRE11P49959 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.21■□□□□ 0.51
MRE11P49959 AC092135.3-201ENST00000624151 1846 ntBASIC18.21■□□□□ 0.51
MRE11P49959 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MRE11P49959 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC18.21■□□□□ 0.51
MRE11P49959 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
MRE11P49959 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
MRE11P49959 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.21■□□□□ 0.51
MRE11P49959 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.21■□□□□ 0.51
MRE11P49959 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MRE11P49959 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
MRE11P49959 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MRE11P49959 CICP8-201ENST00000455800 2813 ntBASIC18.21■□□□□ 0.51
MRE11P49959 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MRE11P49959 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MRE11P49959 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MRE11P49959 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
MRE11P49959 TERF1P3-201ENST00000505638 1227 ntBASIC18.21■□□□□ 0.51
MRE11P49959 RNA5SP421-201ENST00000516864 134 ntBASIC18.21■□□□□ 0.51
MRE11P49959 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.21■□□□□ 0.51
MRE11P49959 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.21■□□□□ 0.51
MRE11P49959 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.21■□□□□ 0.51
MRE11P49959 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.21■□□□□ 0.51
MRE11P49959 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.21■□□□□ 0.51
MRE11P49959 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.21■□□□□ 0.51
MRE11P49959 AC025062.2-201ENST00000605477 670 ntBASIC18.21■□□□□ 0.51
MRE11P49959 AL353135.1-201ENST00000606729 504 ntBASIC18.21■□□□□ 0.51
MRE11P49959 CECR7-204ENST00000609932 568 ntTSL 2 BASIC18.21■□□□□ 0.51
MRE11P49959 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MRE11P49959 PTENP1-202ENST00000532280 3996 ntBASIC18.21■□□□□ 0.51
MRE11P49959 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MRE11P49959 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC18.21■□□□□ 0.51
MRE11P49959 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
MRE11P49959 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MRE11P49959 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MRE11P49959 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MRE11P49959 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MRE11P49959 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
MRE11P49959 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MRE11P49959 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
MRE11P49959 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.21■□□□□ 0.51
MRE11P49959 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
MRE11P49959 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
MRE11P49959 AL359881.3-201ENST00000602640 1721 ntBASIC18.2■□□□□ 0.5
MRE11P49959 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC18.2■□□□□ 0.5
MRE11P49959 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC18.2■□□□□ 0.5
MRE11P49959 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.2■□□□□ 0.5
MRE11P49959 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
MRE11P49959 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.2■□□□□ 0.5
MRE11P49959 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
MRE11P49959 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.2■□□□□ 0.5
MRE11P49959 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.2■□□□□ 0.5
MRE11P49959 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC18.2■□□□□ 0.5
MRE11P49959 KRT18P2-201ENST00000447938 1258 ntBASIC18.2■□□□□ 0.5
MRE11P49959 PARP8-218ENST00000513738 596 ntTSL 4 BASIC18.2■□□□□ 0.5
MRE11P49959 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.2■□□□□ 0.5
MRE11P49959 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.2■□□□□ 0.5
MRE11P49959 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.2■□□□□ 0.5
MRE11P49959 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC18.2■□□□□ 0.5
MRE11P49959 AL078644.1-201ENST00000609881 752 ntBASIC18.2■□□□□ 0.5
MRE11P49959 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
MRE11P49959 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC18.2■□□□□ 0.5
MRE11P49959 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
MRE11P49959 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.2■□□□□ 0.5
MRE11P49959 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MRE11P49959 USP35-204ENST00000530267 2419 ntTSL 2 BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms