Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
SMARCA1P28370 AC132938.4-201ENST00000623835 848 ntBASIC17.69■□□□□ 0.42
SMARCA1P28370 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMARCA1P28370 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
SMARCA1P28370 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
SMARCA1P28370 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
SMARCA1P28370 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
SMARCA1P28370 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SMARCA1P28370 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SMARCA1P28370 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
SMARCA1P28370 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMARCA1P28370 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMARCA1P28370 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMARCA1P28370 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.68■□□□□ 0.42
SMARCA1P28370 AL162727.3-201ENST00000635661 2787 ntBASIC17.68■□□□□ 0.42
SMARCA1P28370 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
SMARCA1P28370 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SMARCA1P28370 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.68■□□□□ 0.42
SMARCA1P28370 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMARCA1P28370 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMARCA1P28370 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMARCA1P28370 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMARCA1P28370 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMARCA1P28370 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
SMARCA1P28370 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMARCA1P28370 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
SMARCA1P28370 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.68■□□□□ 0.42
SMARCA1P28370 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.68■□□□□ 0.42
SMARCA1P28370 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SMARCA1P28370 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC17.68■□□□□ 0.42
SMARCA1P28370 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17.68■□□□□ 0.42
SMARCA1P28370 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC17.68■□□□□ 0.42
SMARCA1P28370 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC17.68■□□□□ 0.42
SMARCA1P28370 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.68■□□□□ 0.42
SMARCA1P28370 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.68■□□□□ 0.42
SMARCA1P28370 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC17.68■□□□□ 0.42
SMARCA1P28370 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SMARCA1P28370 AC006486.2-201ENST00000624246 2199 ntBASIC17.68■□□□□ 0.42
SMARCA1P28370 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SMARCA1P28370 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.68■□□□□ 0.42
SMARCA1P28370 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMARCA1P28370 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.68■□□□□ 0.42
SMARCA1P28370 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
SMARCA1P28370 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SMARCA1P28370 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMARCA1P28370 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMARCA1P28370 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
SMARCA1P28370 AC092384.3-202ENST00000564646 2873 ntBASIC17.68■□□□□ 0.42
SMARCA1P28370 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMARCA1P28370 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.68■□□□□ 0.42
SMARCA1P28370 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMARCA1P28370 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC17.67■□□□□ 0.42
SMARCA1P28370 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SMARCA1P28370 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.67■□□□□ 0.42
SMARCA1P28370 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SMARCA1P28370 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 AC018665.1-201ENST00000622927 1362 ntBASIC17.67■□□□□ 0.42
SMARCA1P28370 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SMARCA1P28370 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC17.67■□□□□ 0.42
SMARCA1P28370 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
SMARCA1P28370 AC126177.1-201ENST00000547829 2218 ntBASIC17.67■□□□□ 0.42
SMARCA1P28370 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SMARCA1P28370 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
SMARCA1P28370 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 AC138035.3-201ENST00000622706 2791 ntBASIC17.67■□□□□ 0.42
SMARCA1P28370 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC17.67■□□□□ 0.42
SMARCA1P28370 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
SMARCA1P28370 AC079776.1-201ENST00000401540 1152 ntBASIC17.67■□□□□ 0.42
SMARCA1P28370 KRT43P-201ENST00000434019 910 ntBASIC17.67■□□□□ 0.42
SMARCA1P28370 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SMARCA1P28370 AC022616.1-201ENST00000518688 554 ntBASIC17.67■□□□□ 0.42
SMARCA1P28370 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.67■□□□□ 0.42
SMARCA1P28370 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC17.67■□□□□ 0.42
SMARCA1P28370 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
SMARCA1P28370 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 GNRHR2-203ENST00000581100 1187 ntBASIC17.67■□□□□ 0.42
SMARCA1P28370 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC17.67■□□□□ 0.42
SMARCA1P28370 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
SMARCA1P28370 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.67■□□□□ 0.42
SMARCA1P28370 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC17.67■□□□□ 0.42
SMARCA1P28370 AL138709.1-201ENST00000614840 1693 ntBASIC17.67■□□□□ 0.42
SMARCA1P28370 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.67■□□□□ 0.42
SMARCA1P28370 AC013268.4-201ENST00000637413 2228 ntBASIC17.67■□□□□ 0.42
SMARCA1P28370 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.67■□□□□ 0.42
SMARCA1P28370 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMARCA1P28370 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms