Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 FTLP10-202ENST00000505798 471 ntBASIC20.12■□□□□ 0.81
COL3A1P02461 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC20.12■□□□□ 0.81
COL3A1P02461 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC20.12■□□□□ 0.81
COL3A1P02461 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL3A1P02461 CYGB-203ENST00000589145 788 ntTSL 3 BASIC20.12■□□□□ 0.81
COL3A1P02461 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC20.12■□□□□ 0.81
COL3A1P02461 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC20.12■□□□□ 0.81
COL3A1P02461 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.12■□□□□ 0.81
COL3A1P02461 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
COL3A1P02461 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL3A1P02461 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC20.12■□□□□ 0.81
COL3A1P02461 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC20.12■□□□□ 0.81
COL3A1P02461 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL3A1P02461 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
COL3A1P02461 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC20.12■□□□□ 0.81
COL3A1P02461 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC20.12■□□□□ 0.81
COL3A1P02461 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL3A1P02461 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL3A1P02461 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL3A1P02461 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC20.12■□□□□ 0.81
COL3A1P02461 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL3A1P02461 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
COL3A1P02461 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL3A1P02461 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL3A1P02461 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL3A1P02461 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC20.12■□□□□ 0.81
COL3A1P02461 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC20.12■□□□□ 0.81
COL3A1P02461 TPM3P8-201ENST00000330554 643 ntBASIC20.11■□□□□ 0.81
COL3A1P02461 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
COL3A1P02461 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL3A1P02461 SERF2-209ENST00000409646 559 ntTSL 4 BASIC20.11■□□□□ 0.81
COL3A1P02461 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
COL3A1P02461 RPSAP36-202ENST00000494591 1261 ntBASIC20.11■□□□□ 0.81
COL3A1P02461 COX5BP1-201ENST00000507622 393 ntBASIC20.11■□□□□ 0.81
COL3A1P02461 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC20.11■□□□□ 0.81
COL3A1P02461 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC20.11■□□□□ 0.81
COL3A1P02461 KLK3-211ENST00000597483 810 ntTSL 2 BASIC20.11■□□□□ 0.81
COL3A1P02461 AC010328.2-201ENST00000597698 1111 ntBASIC20.11■□□□□ 0.81
COL3A1P02461 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC20.11■□□□□ 0.81
COL3A1P02461 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.11■□□□□ 0.81
COL3A1P02461 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL3A1P02461 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL3A1P02461 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC20.11■□□□□ 0.81
COL3A1P02461 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC20.11■□□□□ 0.81
COL3A1P02461 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC20.11■□□□□ 0.81
COL3A1P02461 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC20.11■□□□□ 0.81
COL3A1P02461 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC20.11■□□□□ 0.81
COL3A1P02461 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL3A1P02461 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC20.11■□□□□ 0.81
COL3A1P02461 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL3A1P02461 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL3A1P02461 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL3A1P02461 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL3A1P02461 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC20.11■□□□□ 0.81
COL3A1P02461 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL3A1P02461 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL3A1P02461 AL136309.1-201ENST00000403917 691 ntBASIC20.11■□□□□ 0.81
COL3A1P02461 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC20.11■□□□□ 0.81
COL3A1P02461 MTX1P1-201ENST00000440904 838 ntBASIC20.11■□□□□ 0.81
COL3A1P02461 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC20.11■□□□□ 0.81
COL3A1P02461 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL3A1P02461 MIR4683-201ENST00000579659 81 ntBASIC20.11■□□□□ 0.81
COL3A1P02461 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL3A1P02461 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC20.11■□□□□ 0.81
COL3A1P02461 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL3A1P02461 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL3A1P02461 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC20.1■□□□□ 0.81
COL3A1P02461 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL3A1P02461 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
COL3A1P02461 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL3A1P02461 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL3A1P02461 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL3A1P02461 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
COL3A1P02461 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL3A1P02461 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL3A1P02461 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC20.1■□□□□ 0.81
COL3A1P02461 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC20.1■□□□□ 0.81
COL3A1P02461 AC018735.1-201ENST00000437208 1502 ntBASIC20.1■□□□□ 0.81
COL3A1P02461 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL3A1P02461 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL3A1P02461 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC20.1■□□□□ 0.81
COL3A1P02461 TISP43-201ENST00000409793 538 ntTSL 4 BASIC20.1■□□□□ 0.81
COL3A1P02461 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC20.1■□□□□ 0.81
COL3A1P02461 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC20.1■□□□□ 0.81
COL3A1P02461 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC20.1■□□□□ 0.81
COL3A1P02461 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC20.1■□□□□ 0.81
COL3A1P02461 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC20.1■□□□□ 0.81
COL3A1P02461 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC20.1■□□□□ 0.81
COL3A1P02461 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC20.1■□□□□ 0.81
COL3A1P02461 ZACNP1-201ENST00000612259 710 ntBASIC20.1■□□□□ 0.81
COL3A1P02461 ANKRD30BP2-201ENST00000435744 1610 ntBASIC20.1■□□□□ 0.81
COL3A1P02461 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL3A1P02461 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC20.1■□□□□ 0.81
COL3A1P02461 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
COL3A1P02461 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL3A1P02461 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL3A1P02461 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC20.09■□□□□ 0.81
COL3A1P02461 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
COL3A1P02461 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC20.09■□□□□ 0.81
COL3A1P02461 AGAP7P-201ENST00000582299 2062 ntBASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms