Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
TNFP01375 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TNFP01375 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TNFP01375 AL391005.1-201ENST00000623953 2435 ntBASIC15.1■□□□□ 0.01
TNFP01375 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.1■□□□□ 0.01
TNFP01375 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 RNU1-114P-201ENST00000365297 166 ntBASIC15.1■□□□□ 0.01
TNFP01375 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.1■□□□□ 0.01
TNFP01375 APOC3-202ENST00000375345 604 ntTSL 5 BASIC15.1■□□□□ 0.01
TNFP01375 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TNFP01375 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 YBX1P6-201ENST00000442962 1002 ntBASIC15.1■□□□□ 0.01
TNFP01375 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC15.1■□□□□ 0.01
TNFP01375 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC15.1■□□□□ 0.01
TNFP01375 AC092658.1-201ENST00000505836 891 ntBASIC15.1■□□□□ 0.01
TNFP01375 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
TNFP01375 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.1■□□□□ 0.01
TNFP01375 AC023310.1-201ENST00000554836 735 ntBASIC15.1■□□□□ 0.01
TNFP01375 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.1■□□□□ 0.01
TNFP01375 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.1■□□□□ 0.01
TNFP01375 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.1■□□□□ 0.01
TNFP01375 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.1■□□□□ 0.01
TNFP01375 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
TNFP01375 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.1■□□□□ 0.01
TNFP01375 AC007787.1-201ENST00000588095 1583 ntBASIC15.1■□□□□ 0.01
TNFP01375 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.1■□□□□ 0.01
TNFP01375 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.1■□□□□ 0.01
TNFP01375 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TNFP01375 AP005117.1-202ENST00000581724 1908 ntBASIC15.09■□□□□ 0.01
TNFP01375 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.09■□□□□ 0.01
TNFP01375 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.09■□□□□ 0.01
TNFP01375 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 LRRC59-203ENST00000576448 1531 ntBASIC15.09■□□□□ 0.01
TNFP01375 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
TNFP01375 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.09■□□□□ 0.01
TNFP01375 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.09■□□□□ 0.01
TNFP01375 ACTBP8-201ENST00000403258 1108 ntBASIC15.09■□□□□ 0.01
TNFP01375 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.09■□□□□ 0.01
TNFP01375 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC15.09■□□□□ 0.01
TNFP01375 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.09■□□□□ 0.01
TNFP01375 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.09■□□□□ 0.01
TNFP01375 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.09■□□□□ 0.01
TNFP01375 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC15.09■□□□□ 0.01
TNFP01375 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.09■□□□□ 0.01
TNFP01375 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.09■□□□□ 0.01
TNFP01375 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
TNFP01375 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.09■□□□□ 0.01
TNFP01375 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TNFP01375 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TNFP01375 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
TNFP01375 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TNFP01375 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0.01
TNFP01375 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
TNFP01375 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TNFP01375 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TNFP01375 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
TNFP01375 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
TNFP01375 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TNFP01375 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.08■□□□□ 0
TNFP01375 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.08■□□□□ 0
TNFP01375 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.08■□□□□ 0
TNFP01375 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TNFP01375 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.08■□□□□ 0
TNFP01375 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms