Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC16.88■□□□□ 0.29
RNF40O75150 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF40O75150 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RNF40O75150 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
RNF40O75150 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF40O75150 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF40O75150 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.87■□□□□ 0.29
RNF40O75150 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF40O75150 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC16.87■□□□□ 0.29
RNF40O75150 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC16.87■□□□□ 0.29
RNF40O75150 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF40O75150 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF40O75150 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF40O75150 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNF40O75150 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNF40O75150 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.87■□□□□ 0.29
RNF40O75150 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNF40O75150 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNF40O75150 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.87■□□□□ 0.29
RNF40O75150 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF40O75150 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
RNF40O75150 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF40O75150 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF40O75150 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNF40O75150 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF40O75150 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.87■□□□□ 0.29
RNF40O75150 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF40O75150 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF40O75150 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
RNF40O75150 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.87■□□□□ 0.29
RNF40O75150 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNF40O75150 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNF40O75150 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
RNF40O75150 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
RNF40O75150 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.86■□□□□ 0.29
RNF40O75150 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
RNF40O75150 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.86■□□□□ 0.29
RNF40O75150 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.86■□□□□ 0.29
RNF40O75150 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.86■□□□□ 0.29
RNF40O75150 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.86■□□□□ 0.29
RNF40O75150 LST1-205ENST00000376089 680 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 LST1-206ENST00000376090 689 ntTSL 2 BASIC16.86■□□□□ 0.29
RNF40O75150 LST1-208ENST00000376093 648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 LST1-209ENST00000376096 565 ntTSL 2 BASIC16.86■□□□□ 0.29
RNF40O75150 LST1-210ENST00000376099 610 ntTSL 2 BASIC16.86■□□□□ 0.29
RNF40O75150 LST1-212ENST00000396101 459 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.86■□□□□ 0.29
RNF40O75150 LST1-214ENST00000418507 726 ntTSL 2 BASIC16.86■□□□□ 0.29
RNF40O75150 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.86■□□□□ 0.29
RNF40O75150 AC012497.1-201ENST00000429392 575 ntBASIC16.86■□□□□ 0.29
RNF40O75150 LST1-217ENST00000438075 764 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
RNF40O75150 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.86■□□□□ 0.29
RNF40O75150 PRYP6-201ENST00000514804 343 ntBASIC16.86■□□□□ 0.29
RNF40O75150 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.86■□□□□ 0.29
RNF40O75150 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.86■□□□□ 0.29
RNF40O75150 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 CICP14-201ENST00000629111 2732 ntBASIC16.86■□□□□ 0.29
RNF40O75150 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.86■□□□□ 0.29
RNF40O75150 AL390755.1-201ENST00000623716 2027 ntBASIC16.86■□□□□ 0.29
RNF40O75150 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
RNF40O75150 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.86■□□□□ 0.29
RNF40O75150 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF40O75150 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
RNF40O75150 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNF40O75150 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RNF40O75150 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RNF40O75150 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.85■□□□□ 0.29
RNF40O75150 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNF40O75150 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RNF40O75150 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNF40O75150 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
RNF40O75150 LINC01144-201ENST00000626198 1710 ntBASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms