Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC12.74□□□□□ -0.37
SSSCA1O60232 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
SSSCA1O60232 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC12.74□□□□□ -0.37
SSSCA1O60232 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SSSCA1O60232 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SSSCA1O60232 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
SSSCA1O60232 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
SSSCA1O60232 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SSSCA1O60232 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SSSCA1O60232 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
SSSCA1O60232 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SSSCA1O60232 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SSSCA1O60232 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC12.74□□□□□ -0.37
SSSCA1O60232 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SSSCA1O60232 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC12.73□□□□□ -0.37
SSSCA1O60232 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC12.73□□□□□ -0.37
SSSCA1O60232 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC12.73□□□□□ -0.37
SSSCA1O60232 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC12.73□□□□□ -0.37
SSSCA1O60232 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC12.73□□□□□ -0.37
SSSCA1O60232 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC12.73□□□□□ -0.37
SSSCA1O60232 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC12.73□□□□□ -0.37
SSSCA1O60232 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 GOLGA2P9-201ENST00000596977 1937 ntBASIC12.73□□□□□ -0.37
SSSCA1O60232 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
SSSCA1O60232 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC12.73□□□□□ -0.37
SSSCA1O60232 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC12.73□□□□□ -0.37
SSSCA1O60232 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC12.73□□□□□ -0.37
SSSCA1O60232 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC12.73□□□□□ -0.37
SSSCA1O60232 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC12.73□□□□□ -0.37
SSSCA1O60232 THTPA-204ENST00000554970 569 ntTSL 4 BASIC12.73□□□□□ -0.37
SSSCA1O60232 THTPA-206ENST00000556015 535 ntTSL 3 BASIC12.73□□□□□ -0.37
SSSCA1O60232 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC12.73□□□□□ -0.37
SSSCA1O60232 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
SSSCA1O60232 AL450472.2-201ENST00000603663 1156 ntBASIC12.73□□□□□ -0.37
SSSCA1O60232 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC12.73□□□□□ -0.37
SSSCA1O60232 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC12.73□□□□□ -0.37
SSSCA1O60232 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC12.73□□□□□ -0.37
SSSCA1O60232 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC12.73□□□□□ -0.37
SSSCA1O60232 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 C1R-201ENST00000535233 2211 ntTSL 2 BASIC12.73□□□□□ -0.37
SSSCA1O60232 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC12.73□□□□□ -0.37
SSSCA1O60232 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC12.73□□□□□ -0.37
SSSCA1O60232 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
SSSCA1O60232 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SSSCA1O60232 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC12.72□□□□□ -0.37
SSSCA1O60232 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SSSCA1O60232 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC12.72□□□□□ -0.37
SSSCA1O60232 AC027601.5-201ENST00000624065 2482 ntBASIC12.72□□□□□ -0.37
SSSCA1O60232 ACE3P-201ENST00000423435 1973 ntBASIC12.72□□□□□ -0.37
SSSCA1O60232 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SSSCA1O60232 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
SSSCA1O60232 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SSSCA1O60232 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SSSCA1O60232 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
SSSCA1O60232 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC12.72□□□□□ -0.37
SSSCA1O60232 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SSSCA1O60232 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
SSSCA1O60232 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC12.72□□□□□ -0.37
SSSCA1O60232 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
SSSCA1O60232 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SSSCA1O60232 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC12.72□□□□□ -0.37
SSSCA1O60232 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC12.72□□□□□ -0.37
SSSCA1O60232 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SSSCA1O60232 AC010327.5-201ENST00000586923 3061 ntBASIC12.72□□□□□ -0.37
SSSCA1O60232 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC12.72□□□□□ -0.37
SSSCA1O60232 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC12.72□□□□□ -0.37
SSSCA1O60232 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SSSCA1O60232 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SSSCA1O60232 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SSSCA1O60232 DDT-204ENST00000404092 805 ntTSL 3 BASIC12.72□□□□□ -0.37
SSSCA1O60232 AC092474.2-201ENST00000424288 719 ntBASIC12.72□□□□□ -0.37
SSSCA1O60232 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC12.72□□□□□ -0.37
SSSCA1O60232 PRSS29P-201ENST00000440800 595 ntBASIC12.72□□□□□ -0.37
SSSCA1O60232 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC12.72□□□□□ -0.37
SSSCA1O60232 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC12.72□□□□□ -0.37
SSSCA1O60232 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC12.72□□□□□ -0.37
SSSCA1O60232 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms