Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ILF3-AS1-201ENST00000591501 1983 ntBASIC12.58□□□□□ -0.4
HMGB3O15347 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
HMGB3O15347 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC12.58□□□□□ -0.4
HMGB3O15347 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC12.58□□□□□ -0.4
HMGB3O15347 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC12.58□□□□□ -0.4
HMGB3O15347 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC12.58□□□□□ -0.4
HMGB3O15347 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 AC104819.1-201ENST00000504587 486 ntBASIC12.58□□□□□ -0.4
HMGB3O15347 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC12.58□□□□□ -0.4
HMGB3O15347 AP000867.3-201ENST00000524675 377 ntBASIC12.58□□□□□ -0.4
HMGB3O15347 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC12.58□□□□□ -0.4
HMGB3O15347 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC12.58□□□□□ -0.4
HMGB3O15347 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
HMGB3O15347 AL591684.3-201ENST00000605187 298 ntBASIC12.58□□□□□ -0.4
HMGB3O15347 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC12.58□□□□□ -0.4
HMGB3O15347 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC12.58□□□□□ -0.4
HMGB3O15347 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC12.58□□□□□ -0.4
HMGB3O15347 TBL1X-202ENST00000380961 4674 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
HMGB3O15347 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
HMGB3O15347 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC12.58□□□□□ -0.4
HMGB3O15347 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
HMGB3O15347 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
HMGB3O15347 ZNF609-201ENST00000326648 8746 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
HMGB3O15347 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
HMGB3O15347 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC12.58□□□□□ -0.4
HMGB3O15347 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC12.58□□□□□ -0.4
HMGB3O15347 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC12.58□□□□□ -0.4
HMGB3O15347 AC010327.5-201ENST00000586923 3061 ntBASIC12.58□□□□□ -0.4
HMGB3O15347 AC134407.2-201ENST00000625089 1978 ntBASIC12.58□□□□□ -0.4
HMGB3O15347 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC12.58□□□□□ -0.4
HMGB3O15347 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 AC131212.3-201ENST00000624087 4219 ntBASIC12.58□□□□□ -0.4
HMGB3O15347 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
HMGB3O15347 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 ZC3H10-201ENST00000257940 7228 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC12.57□□□□□ -0.4
HMGB3O15347 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 SLC6A19-201ENST00000304460 5174 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC12.57□□□□□ -0.4
HMGB3O15347 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC12.57□□□□□ -0.4
HMGB3O15347 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC12.57□□□□□ -0.4
HMGB3O15347 PTCHD1-201ENST00000379361 13714 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 LIMCH1-208ENST00000508501 5054 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 LIMCH1-217ENST00000512946 5057 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC12.57□□□□□ -0.4
HMGB3O15347 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
HMGB3O15347 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 TP73-206ENST00000378288 5120 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
HMGB3O15347 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 AP002383.4-201ENST00000442518 975 ntBASIC12.57□□□□□ -0.4
HMGB3O15347 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
HMGB3O15347 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC12.57□□□□□ -0.4
HMGB3O15347 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC12.57□□□□□ -0.4
HMGB3O15347 IL11-204ENST00000590625 1028 ntTSL 2 BASIC12.57□□□□□ -0.4
HMGB3O15347 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC12.57□□□□□ -0.4
HMGB3O15347 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
HMGB3O15347 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
HMGB3O15347 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC12.57□□□□□ -0.4
HMGB3O15347 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC12.57□□□□□ -0.4
HMGB3O15347 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC12.57□□□□□ -0.4
HMGB3O15347 MYO1C-201ENST00000359786 5145 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HMGB3O15347 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC12.57□□□□□ -0.4
HMGB3O15347 TKT-202ENST00000423516 2075 ntTSL 2 BASIC12.57□□□□□ -0.4
HMGB3O15347 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC12.57□□□□□ -0.4
HMGB3O15347 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC12.56□□□□□ -0.4
HMGB3O15347 CACNA1E-205ENST00000367570 9724 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms