RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PELP1Q8IZL8 1130 aaKnown RBP18.8■□□□□ 0.6
LIMCH1-217ENST00000512946 MYT1Q01538 1121 aa18.5■□□□□ 0.55
LIMCH1-217ENST00000512946 CCER1Q8TC90 406 aaPredicted RBP17.87■□□□□ 0.45
LIMCH1-217ENST00000512946 ERICH6Q7L0X2 663 aa17.74■□□□□ 0.43
LIMCH1-217ENST00000512946 CENPBP07199 599 aaPredicted RBP17.64■□□□□ 0.41
LIMCH1-217ENST00000512946 DCAF8L2P0C7V8 631 aa17.55■□□□□ 0.4
LIMCH1-217ENST00000512946 ZEB1P37275 1124 aaPredicted RBP17.4■□□□□ 0.38
LIMCH1-217ENST00000512946 YTHDC1Q96MU7 727 aaKnown RBP17.27■□□□□ 0.36
LIMCH1-217ENST00000512946 SUPT5HO00267 1087 aaKnown RBP17.2■□□□□ 0.34
LIMCH1-217ENST00000512946 APLP2Q06481 763 aa17.16■□□□□ 0.34
LIMCH1-217ENST00000512946 TTBK1Q5TCY1 1321 aaPredicted RBP17.13■□□□□ 0.33
LIMCH1-217ENST00000512946 NEFLP07196 543 aa17.13■□□□□ 0.33
LIMCH1-217ENST00000512946 PCGF6Q9BYE7 350 aa16.83■□□□□ 0.28
LIMCH1-217ENST00000512946 FAM9AQ8IZU1 332 aaPredicted RBP16.79■□□□□ 0.28
LIMCH1-217ENST00000512946 DAXXQ9UER7 740 aaPredicted RBP16.77■□□□□ 0.28
LIMCH1-217ENST00000512946 RTL5Q5HYW3 569 aaPredicted RBP16.59■□□□□ 0.25
LIMCH1-217ENST00000512946 EHMT2Q96KQ7 1210 aa16.46■□□□□ 0.23
LIMCH1-217ENST00000512946 HRCP23327 699 aa16.33■□□□□ 0.21
LIMCH1-217ENST00000512946 SHROOM4Q9ULL8 1493 aa16.31■□□□□ 0.2
LIMCH1-217ENST00000512946 ZNF316A6NFI3 1004 aaPredicted RBP16.28■□□□□ 0.2
LIMCH1-217ENST00000512946 TRIM26Q12899 539 aaPredicted RBP16.24■□□□□ 0.19
LIMCH1-217ENST00000512946 GLIPR1L2Q4G1C9 344 aa16.22■□□□□ 0.19
LIMCH1-217ENST00000512946 MYT1LQ9UL68 1186 aa16.15■□□□□ 0.18
LIMCH1-217ENST00000512946 TRIM41Q8WV44 630 aa16.1■□□□□ 0.17
LIMCH1-217ENST00000512946 NISCHQ9Y2I1 1504 aa16■□□□□ 0.15
LIMCH1-217ENST00000512946 CLSPNQ9HAW4 1339 aa15.98■□□□□ 0.15
LIMCH1-217ENST00000512946 CDK11AQ9UQ88 783 aaPredicted RBP15.96■□□□□ 0.15
LIMCH1-217ENST00000512946 UBTFP17480 764 aaKnown RBP15.95■□□□□ 0.14
LIMCH1-217ENST00000512946 DIEXFQ68CQ4 756 aaKnown RBP15.88■□□□□ 0.13
LIMCH1-217ENST00000512946 ATP1B4Q9UN42 357 aaPredicted RBP15.84■□□□□ 0.13
LIMCH1-217ENST00000512946 ANP32BQ92688 251 aaKnown RBP15.79■□□□□ 0.12
LIMCH1-217ENST00000512946 EIF5BO60841 1220 aaKnown RBP15.78■□□□□ 0.12
LIMCH1-217ENST00000512946 ANP32AP39687 249 aaKnown RBP15.78■□□□□ 0.12
LIMCH1-217ENST00000512946 GTF3C3Q9Y5Q9 886 aa15.78■□□□□ 0.12
LIMCH1-217ENST00000512946 RANGAP1P46060 587 aaPredicted RBP15.71■□□□□ 0.1
LIMCH1-217ENST00000512946 ZBTB47Q9UFB7 747 aaPredicted RBP15.68■□□□□ 0.1
LIMCH1-217ENST00000512946 POLR3GLQ9BT43 218 aa15.64■□□□□ 0.09
LIMCH1-217ENST00000512946 ACIN1Q9UKV3 1341 aaKnown RBP15.62■□□□□ 0.09
LIMCH1-217ENST00000512946 ANP32CO43423 234 aa15.57■□□□□ 0.08
LIMCH1-217ENST00000512946 TNNT2P45379 298 aaPredicted RBP15.52■□□□□ 0.08
LIMCH1-217ENST00000512946 BCANQ96GW7 911 aa15.48■□□□□ 0.07
LIMCH1-217ENST00000512946 HNRNPUL2Q1KMD3 747 aaKnown RBP15.45■□□□□ 0.06
LIMCH1-217ENST00000512946 PPARGC1BQ86YN6 1023 aaKnown RBP15.43■□□□□ 0.06
LIMCH1-217ENST00000512946 ANP32EQ9BTT0 268 aa15.43■□□□□ 0.06
LIMCH1-217ENST00000512946 UPF2Q9HAU5 1272 aaKnown RBP15.42■□□□□ 0.06
LIMCH1-217ENST00000512946 ITGAEP38570 1179 aa15.39■□□□□ 0.05
LIMCH1-217ENST00000512946 NEFMP07197 916 aa15.35■□□□□ 0.05
LIMCH1-217ENST00000512946 TRIM44Q96DX7 344 aaPredicted RBP15.34■□□□□ 0.05
LIMCH1-217ENST00000512946 CANXP27824 592 aaKnown RBP15.34■□□□□ 0.05
LIMCH1-217ENST00000512946 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.33■□□□□ 0.05
LIMCH1-217ENST00000512946 HSP90AA1P07900 732 aaKnown RBP15.31■□□□□ 0.04
LIMCH1-217ENST00000512946 SLC4A1APQ9BWU0 796 aaKnown RBP15.29■□□□□ 0.04
LIMCH1-217ENST00000512946 ERICH6BQ5W0A0 696 aa15.28■□□□□ 0.04
LIMCH1-217ENST00000512946 NCLP19338 710 aaKnown RBP15.27■□□□□ 0.04
LIMCH1-217ENST00000512946 CNGB1Q14028 1251 aaPredicted RBP15.27■□□□□ 0.03
LIMCH1-217ENST00000512946 CHIC1Q5VXU3 224 aa15.26■□□□□ 0.03
LIMCH1-217ENST00000512946 NPM2Q86SE8 214 aaKnown RBP15.23■□□□□ 0.03
LIMCH1-217ENST00000512946 DDRGK1Q96HY6 314 aa15.18■□□□□ 0.02
LIMCH1-217ENST00000512946 CDK11BP21127 795 aaKnown RBP15.17■□□□□ 0.02
LIMCH1-217ENST00000512946 FKBP8Q14318 412 aa15.16■□□□□ 0.02
LIMCH1-217ENST00000512946 LOC105371045A0A1W2PR82 267 aa15.13■□□□□ 0.01
LIMCH1-217ENST00000512946 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.12■□□□□ 0.01
LIMCH1-217ENST00000512946 PPM1GO15355 546 aaPredicted RBP15.1■□□□□ 0.01
LIMCH1-217ENST00000512946 BECN1Q14457 450 aa15.09■□□□□ 0.01
LIMCH1-217ENST00000512946 TRIM52Q96A61 297 aa15.09■□□□□ 0.01
LIMCH1-217ENST00000512946 NBR1Q14596 966 aa15.08■□□□□ 0
LIMCH1-217ENST00000512946 GOLGA6L22H0YM25 854 aa15.08■□□□□ 0
LIMCH1-217ENST00000512946 CCDC136Q96JN2 1154 aa15.06■□□□□ 0
LIMCH1-217ENST00000512946 NEUROD1Q13562 356 aa15.05■□□□□ 0
LIMCH1-217ENST00000512946 FAM50AQ14320 339 aaKnown RBP15.04■□□□□ -0
LIMCH1-217ENST00000512946 HNRNPUQ00839 825 aaKnown RBP eCLIP14.94□□□□□ -0.02
LIMCH1-217ENST00000512946 NAP1L5Q96NT1 182 aaPredicted RBP14.93□□□□□ -0.02
LIMCH1-217ENST00000512946 PTMAP06454 111 aaKnown RBP14.9□□□□□ -0.02
LIMCH1-217ENST00000512946 DNTTIP2Q5QJE6 756 aaKnown RBP14.88□□□□□ -0.03
LIMCH1-217ENST00000512946 BCL11AQ9H165 835 aa14.87□□□□□ -0.03
LIMCH1-217ENST00000512946 SCAF1Q9H7N4 1312 aaKnown RBP14.86□□□□□ -0.03
LIMCH1-217ENST00000512946 NRDCO43847 1150 aa14.86□□□□□ -0.03
LIMCH1-217ENST00000512946 ZNF326Q5BKZ1 582 aaKnown RBP14.85□□□□□ -0.03
LIMCH1-217ENST00000512946 L1TD1Q5T7N2 865 aaKnown RBP14.84□□□□□ -0.03
LIMCH1-217ENST00000512946 GOLGA6L6A8MZA4 724 aa14.82□□□□□ -0.04
LIMCH1-217ENST00000512946 CHAF1AQ13111 956 aaPredicted RBP14.82□□□□□ -0.04
LIMCH1-217ENST00000512946 ZRSR1Q15695 479 aaKnown RBP14.81□□□□□ -0.04
LIMCH1-217ENST00000512946 ARXQ96QS3 562 aa14.81□□□□□ -0.04
LIMCH1-217ENST00000512946 MYH16Q9H6N6 1097 aa14.81□□□□□ -0.04
LIMCH1-217ENST00000512946 TONSLQ96HA7 1378 aa14.78□□□□□ -0.04
LIMCH1-217ENST00000512946 SLC24A1O60721 1099 aa14.78□□□□□ -0.04
LIMCH1-217ENST00000512946 TMC1Q8TDI8 760 aa14.76□□□□□ -0.05
LIMCH1-217ENST00000512946 NOP58Q9Y2X3 529 aaKnown RBP14.74□□□□□ -0.05
LIMCH1-217ENST00000512946 FAM9BQ8IZU0 186 aa14.71□□□□□ -0.05
LIMCH1-217ENST00000512946 PTMSP20962 102 aa14.7□□□□□ -0.06
LIMCH1-217ENST00000512946 MSNP26038 577 aaKnown RBP14.7□□□□□ -0.06
LIMCH1-217ENST00000512946 DCAF1Q9Y4B6 1507 aa14.69□□□□□ -0.06
LIMCH1-217ENST00000512946 WDR43Q15061 677 aaKnown RBP eCLIP14.69□□□□□ -0.06
LIMCH1-217ENST00000512946 TNNT3P45378 269 aaPredicted RBP14.67□□□□□ -0.06
LIMCH1-217ENST00000512946 CASC1Q6TDU7 716 aa14.67□□□□□ -0.06
LIMCH1-217ENST00000512946 DDX10Q13206 875 aaKnown RBP14.66□□□□□ -0.06
LIMCH1-217ENST00000512946 MRS2Q9HD23 443 aa14.66□□□□□ -0.06
LIMCH1-217ENST00000512946 ARID4BQ4LE39 1312 aaPredicted RBP14.65□□□□□ -0.06
LIMCH1-217ENST00000512946 PPP4R2Q9NY27 417 aa14.64□□□□□ -0.07
LIMCH1-217ENST00000512946 USP35Q9P2H5 1018 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms