Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VSX1Q9NZR4 LONRF2P2-201ENST00000439212 571 ntBASIC20.68■□□□□ 0.9
VSX1Q9NZR4 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.68■□□□□ 0.9
VSX1Q9NZR4 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.68■□□□□ 0.9
VSX1Q9NZR4 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
VSX1Q9NZR4 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.68■□□□□ 0.9
VSX1Q9NZR4 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.68■□□□□ 0.9
VSX1Q9NZR4 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
VSX1Q9NZR4 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VSX1Q9NZR4 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VSX1Q9NZR4 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.67■□□□□ 0.9
VSX1Q9NZR4 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
VSX1Q9NZR4 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VSX1Q9NZR4 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
VSX1Q9NZR4 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VSX1Q9NZR4 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VSX1Q9NZR4 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VSX1Q9NZR4 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
VSX1Q9NZR4 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
VSX1Q9NZR4 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VSX1Q9NZR4 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
VSX1Q9NZR4 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
VSX1Q9NZR4 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VSX1Q9NZR4 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.65■□□□□ 0.9
VSX1Q9NZR4 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VSX1Q9NZR4 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.65■□□□□ 0.9
VSX1Q9NZR4 ABHD17AP5-201ENST00000580133 923 ntBASIC20.65■□□□□ 0.9
VSX1Q9NZR4 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.65■□□□□ 0.9
VSX1Q9NZR4 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VSX1Q9NZR4 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
VSX1Q9NZR4 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VSX1Q9NZR4 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VSX1Q9NZR4 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.64■□□□□ 0.9
VSX1Q9NZR4 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.64■□□□□ 0.9
VSX1Q9NZR4 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.64■□□□□ 0.9
VSX1Q9NZR4 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VSX1Q9NZR4 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
VSX1Q9NZR4 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VSX1Q9NZR4 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
VSX1Q9NZR4 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VSX1Q9NZR4 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
VSX1Q9NZR4 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
VSX1Q9NZR4 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VSX1Q9NZR4 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VSX1Q9NZR4 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VSX1Q9NZR4 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
VSX1Q9NZR4 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VSX1Q9NZR4 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VSX1Q9NZR4 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VSX1Q9NZR4 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VSX1Q9NZR4 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
VSX1Q9NZR4 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
VSX1Q9NZR4 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VSX1Q9NZR4 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VSX1Q9NZR4 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
VSX1Q9NZR4 NTF6A-201ENST00000591175 560 ntBASIC20.62■□□□□ 0.89
VSX1Q9NZR4 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VSX1Q9NZR4 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VSX1Q9NZR4 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.62■□□□□ 0.89
VSX1Q9NZR4 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.61■□□□□ 0.89
VSX1Q9NZR4 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VSX1Q9NZR4 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.61■□□□□ 0.89
VSX1Q9NZR4 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.61■□□□□ 0.89
VSX1Q9NZR4 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.61■□□□□ 0.89
VSX1Q9NZR4 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VSX1Q9NZR4 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
VSX1Q9NZR4 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VSX1Q9NZR4 ABCB10P4-201ENST00000566803 2184 ntBASIC20.61■□□□□ 0.89
VSX1Q9NZR4 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
VSX1Q9NZR4 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.6■□□□□ 0.89
VSX1Q9NZR4 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
VSX1Q9NZR4 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VSX1Q9NZR4 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.6■□□□□ 0.89
VSX1Q9NZR4 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.6■□□□□ 0.89
VSX1Q9NZR4 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
VSX1Q9NZR4 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.59■□□□□ 0.89
VSX1Q9NZR4 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VSX1Q9NZR4 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VSX1Q9NZR4 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VSX1Q9NZR4 AC019171.1-201ENST00000601251 1056 ntBASIC20.59■□□□□ 0.89
VSX1Q9NZR4 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VSX1Q9NZR4 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VSX1Q9NZR4 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VSX1Q9NZR4 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VSX1Q9NZR4 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VSX1Q9NZR4 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
VSX1Q9NZR4 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
VSX1Q9NZR4 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.58■□□□□ 0.89
VSX1Q9NZR4 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.58■□□□□ 0.89
VSX1Q9NZR4 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.58■□□□□ 0.89
VSX1Q9NZR4 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.88
VSX1Q9NZR4 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
VSX1Q9NZR4 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VSX1Q9NZR4 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
VSX1Q9NZR4 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VSX1Q9NZR4 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.57■□□□□ 0.88
VSX1Q9NZR4 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VSX1Q9NZR4 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.57■□□□□ 0.88
VSX1Q9NZR4 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VSX1Q9NZR4 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms