Protein–RNA interactions for Protein: Q9HBL6

LRTM1, Leucine-rich repeat and transmembrane domain-containing protein 1, humanhuman

Predictions only

Length 345 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRTM1Q9HBL6 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC22.29■■□□□ 1.16
LRTM1Q9HBL6 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC22.29■■□□□ 1.16
LRTM1Q9HBL6 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
LRTM1Q9HBL6 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
LRTM1Q9HBL6 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC22.29■■□□□ 1.16
LRTM1Q9HBL6 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
LRTM1Q9HBL6 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LRTM1Q9HBL6 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
LRTM1Q9HBL6 RARRES2P2-201ENST00000394842 485 ntBASIC22.28■■□□□ 1.16
LRTM1Q9HBL6 AC087393.1-201ENST00000582896 145 ntBASIC22.28■■□□□ 1.16
LRTM1Q9HBL6 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
LRTM1Q9HBL6 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC22.28■■□□□ 1.16
LRTM1Q9HBL6 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
LRTM1Q9HBL6 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.28■■□□□ 1.16
LRTM1Q9HBL6 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LRTM1Q9HBL6 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC22.28■■□□□ 1.16
LRTM1Q9HBL6 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
LRTM1Q9HBL6 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
LRTM1Q9HBL6 CASK-201ENST00000378154 2494 ntTSL 5 BASIC22.27■■□□□ 1.16
LRTM1Q9HBL6 IDNK-203ENST00000405990 629 ntTSL 2 BASIC22.27■■□□□ 1.16
LRTM1Q9HBL6 MIR6765-201ENST00000614092 87 ntBASIC22.27■■□□□ 1.16
LRTM1Q9HBL6 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC22.27■■□□□ 1.16
LRTM1Q9HBL6 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
LRTM1Q9HBL6 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
LRTM1Q9HBL6 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
LRTM1Q9HBL6 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRTM1Q9HBL6 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
LRTM1Q9HBL6 DUX4L9-201ENST00000449051 1259 ntBASIC22.26■■□□□ 1.15
LRTM1Q9HBL6 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC22.26■■□□□ 1.15
LRTM1Q9HBL6 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
LRTM1Q9HBL6 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.26■■□□□ 1.15
LRTM1Q9HBL6 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRTM1Q9HBL6 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRTM1Q9HBL6 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRTM1Q9HBL6 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRTM1Q9HBL6 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRTM1Q9HBL6 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC22.25■■□□□ 1.15
LRTM1Q9HBL6 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRTM1Q9HBL6 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC22.25■■□□□ 1.15
LRTM1Q9HBL6 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC22.25■■□□□ 1.15
LRTM1Q9HBL6 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC22.25■■□□□ 1.15
LRTM1Q9HBL6 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
LRTM1Q9HBL6 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRTM1Q9HBL6 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
LRTM1Q9HBL6 AC090877.2-201ENST00000558441 1738 ntBASIC22.24■■□□□ 1.15
LRTM1Q9HBL6 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC22.24■■□□□ 1.15
LRTM1Q9HBL6 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRTM1Q9HBL6 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC22.24■■□□□ 1.15
LRTM1Q9HBL6 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC22.24■■□□□ 1.15
LRTM1Q9HBL6 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRTM1Q9HBL6 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LRTM1Q9HBL6 AL592295.1-201ENST00000400984 884 ntBASIC22.23■■□□□ 1.15
LRTM1Q9HBL6 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC22.23■■□□□ 1.15
LRTM1Q9HBL6 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC22.23■■□□□ 1.15
LRTM1Q9HBL6 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC22.23■■□□□ 1.15
LRTM1Q9HBL6 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRTM1Q9HBL6 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.23■■□□□ 1.15
LRTM1Q9HBL6 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
LRTM1Q9HBL6 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC22.22■■□□□ 1.15
LRTM1Q9HBL6 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
LRTM1Q9HBL6 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.22■■□□□ 1.15
LRTM1Q9HBL6 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC22.22■■□□□ 1.15
LRTM1Q9HBL6 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRTM1Q9HBL6 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LRTM1Q9HBL6 U85056.1-201ENST00000616429 682 ntBASIC22.21■■□□□ 1.15
LRTM1Q9HBL6 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRTM1Q9HBL6 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRTM1Q9HBL6 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.21■■□□□ 1.15
LRTM1Q9HBL6 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRTM1Q9HBL6 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.15
LRTM1Q9HBL6 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
LRTM1Q9HBL6 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC22.2■■□□□ 1.15
LRTM1Q9HBL6 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
LRTM1Q9HBL6 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LRTM1Q9HBL6 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
LRTM1Q9HBL6 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
LRTM1Q9HBL6 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC22.2■■□□□ 1.14
LRTM1Q9HBL6 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LRTM1Q9HBL6 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.2■■□□□ 1.14
LRTM1Q9HBL6 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC22.2■■□□□ 1.14
LRTM1Q9HBL6 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRTM1Q9HBL6 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
LRTM1Q9HBL6 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.19■■□□□ 1.14
LRTM1Q9HBL6 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRTM1Q9HBL6 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRTM1Q9HBL6 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LRTM1Q9HBL6 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRTM1Q9HBL6 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRTM1Q9HBL6 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRTM1Q9HBL6 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LRTM1Q9HBL6 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRTM1Q9HBL6 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC22.18■■□□□ 1.14
LRTM1Q9HBL6 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRTM1Q9HBL6 AC129492.7-201ENST00000622992 756 ntBASIC22.18■■□□□ 1.14
LRTM1Q9HBL6 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRTM1Q9HBL6 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRTM1Q9HBL6 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.18■■□□□ 1.14
LRTM1Q9HBL6 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LRTM1Q9HBL6 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRTM1Q9HBL6 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms