Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC27.39■■□□□ 1.98
ZKSCAN3Q9BRR0 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
ZKSCAN3Q9BRR0 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
ZKSCAN3Q9BRR0 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
ZKSCAN3Q9BRR0 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC27.39■■□□□ 1.97
ZKSCAN3Q9BRR0 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
ZKSCAN3Q9BRR0 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
ZKSCAN3Q9BRR0 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
ZKSCAN3Q9BRR0 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
ZKSCAN3Q9BRR0 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
ZKSCAN3Q9BRR0 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
ZKSCAN3Q9BRR0 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
ZKSCAN3Q9BRR0 HES6-204ENST00000409182 863 ntTSL 2 BASIC27.37■■□□□ 1.97
ZKSCAN3Q9BRR0 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC27.37■■□□□ 1.97
ZKSCAN3Q9BRR0 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
ZKSCAN3Q9BRR0 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC27.36■■□□□ 1.97
ZKSCAN3Q9BRR0 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
ZKSCAN3Q9BRR0 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
ZKSCAN3Q9BRR0 HLA-L-211ENST00000482052 1765 ntBASIC27.36■■□□□ 1.97
ZKSCAN3Q9BRR0 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC27.36■■□□□ 1.97
ZKSCAN3Q9BRR0 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC27.36■■□□□ 1.97
ZKSCAN3Q9BRR0 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC27.36■■□□□ 1.97
ZKSCAN3Q9BRR0 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC27.36■■□□□ 1.97
ZKSCAN3Q9BRR0 Z92544.1-202ENST00000571933 1220 ntBASIC27.36■■□□□ 1.97
ZKSCAN3Q9BRR0 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
ZKSCAN3Q9BRR0 AC021242.3-201ENST00000607598 1377 ntBASIC27.35■■□□□ 1.97
ZKSCAN3Q9BRR0 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC27.35■■□□□ 1.97
ZKSCAN3Q9BRR0 MIR4787-201ENST00000607364 84 ntBASIC27.35■■□□□ 1.97
ZKSCAN3Q9BRR0 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
ZKSCAN3Q9BRR0 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
ZKSCAN3Q9BRR0 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
ZKSCAN3Q9BRR0 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
ZKSCAN3Q9BRR0 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
ZKSCAN3Q9BRR0 SENP5-202ENST00000419026 973 ntTSL 3 BASIC27.34■■□□□ 1.97
ZKSCAN3Q9BRR0 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC27.34■■□□□ 1.97
ZKSCAN3Q9BRR0 TMEM202-AS1-202ENST00000565181 2325 ntBASIC27.34■■□□□ 1.97
ZKSCAN3Q9BRR0 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
ZKSCAN3Q9BRR0 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC27.33■■□□□ 1.97
ZKSCAN3Q9BRR0 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC27.33■■□□□ 1.97
ZKSCAN3Q9BRR0 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
ZKSCAN3Q9BRR0 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
ZKSCAN3Q9BRR0 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC27.33■■□□□ 1.97
ZKSCAN3Q9BRR0 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC27.33■■□□□ 1.97
ZKSCAN3Q9BRR0 KRT125P-201ENST00000546827 989 ntBASIC27.33■■□□□ 1.97
ZKSCAN3Q9BRR0 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC27.33■■□□□ 1.97
ZKSCAN3Q9BRR0 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC27.33■■□□□ 1.97
ZKSCAN3Q9BRR0 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
ZKSCAN3Q9BRR0 AP003733.4-201ENST00000623785 1697 ntBASIC27.33■■□□□ 1.97
ZKSCAN3Q9BRR0 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
ZKSCAN3Q9BRR0 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
ZKSCAN3Q9BRR0 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC27.32■■□□□ 1.96
ZKSCAN3Q9BRR0 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
ZKSCAN3Q9BRR0 GUSBP5-201ENST00000418136 578 ntBASIC27.32■■□□□ 1.96
ZKSCAN3Q9BRR0 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC27.32■■□□□ 1.96
ZKSCAN3Q9BRR0 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
ZKSCAN3Q9BRR0 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
ZKSCAN3Q9BRR0 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
ZKSCAN3Q9BRR0 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
ZKSCAN3Q9BRR0 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC27.31■■□□□ 1.96
ZKSCAN3Q9BRR0 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC27.31■■□□□ 1.96
ZKSCAN3Q9BRR0 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC27.31■■□□□ 1.96
ZKSCAN3Q9BRR0 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
ZKSCAN3Q9BRR0 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
ZKSCAN3Q9BRR0 CREM-229ENST00000474362 1030 ntTSL 2 BASIC27.3■■□□□ 1.96
ZKSCAN3Q9BRR0 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
ZKSCAN3Q9BRR0 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC27.29■■□□□ 1.96
ZKSCAN3Q9BRR0 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
ZKSCAN3Q9BRR0 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
ZKSCAN3Q9BRR0 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
ZKSCAN3Q9BRR0 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
ZKSCAN3Q9BRR0 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
ZKSCAN3Q9BRR0 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
ZKSCAN3Q9BRR0 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
ZKSCAN3Q9BRR0 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
ZKSCAN3Q9BRR0 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
ZKSCAN3Q9BRR0 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC27.28■■□□□ 1.96
ZKSCAN3Q9BRR0 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC27.28■■□□□ 1.96
ZKSCAN3Q9BRR0 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
ZKSCAN3Q9BRR0 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
ZKSCAN3Q9BRR0 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC27.28■■□□□ 1.96
ZKSCAN3Q9BRR0 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC27.28■■□□□ 1.96
ZKSCAN3Q9BRR0 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC27.28■■□□□ 1.96
ZKSCAN3Q9BRR0 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
ZKSCAN3Q9BRR0 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
ZKSCAN3Q9BRR0 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC27.27■■□□□ 1.96
ZKSCAN3Q9BRR0 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC27.27■■□□□ 1.96
ZKSCAN3Q9BRR0 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
ZKSCAN3Q9BRR0 TK2-202ENST00000417693 1046 ntTSL 2 BASIC27.27■■□□□ 1.96
ZKSCAN3Q9BRR0 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC27.27■■□□□ 1.96
ZKSCAN3Q9BRR0 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
ZKSCAN3Q9BRR0 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
ZKSCAN3Q9BRR0 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC27.26■■□□□ 1.95
ZKSCAN3Q9BRR0 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC27.26■■□□□ 1.95
ZKSCAN3Q9BRR0 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
ZKSCAN3Q9BRR0 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC27.26■■□□□ 1.95
ZKSCAN3Q9BRR0 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC27.26■■□□□ 1.95
ZKSCAN3Q9BRR0 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
ZKSCAN3Q9BRR0 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC27.25■■□□□ 1.95
ZKSCAN3Q9BRR0 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
ZKSCAN3Q9BRR0 LBH-205ENST00000407930 756 ntTSL 2 BASIC27.25■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms