Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PTCHD1Q96NR3 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PTCHD1Q96NR3 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
PTCHD1Q96NR3 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.88■■□□□ 1.09
PTCHD1Q96NR3 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.88■■□□□ 1.09
PTCHD1Q96NR3 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.88■■□□□ 1.09
PTCHD1Q96NR3 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
PTCHD1Q96NR3 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PTCHD1Q96NR3 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PTCHD1Q96NR3 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.87■■□□□ 1.09
PTCHD1Q96NR3 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.87■■□□□ 1.09
PTCHD1Q96NR3 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTCHD1Q96NR3 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTCHD1Q96NR3 MIR4787-201ENST00000607364 84 ntBASIC21.86■■□□□ 1.09
PTCHD1Q96NR3 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
PTCHD1Q96NR3 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.86■■□□□ 1.09
PTCHD1Q96NR3 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.86■■□□□ 1.09
PTCHD1Q96NR3 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTCHD1Q96NR3 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTCHD1Q96NR3 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PTCHD1Q96NR3 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.85■■□□□ 1.09
PTCHD1Q96NR3 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PTCHD1Q96NR3 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.85■■□□□ 1.09
PTCHD1Q96NR3 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTCHD1Q96NR3 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PTCHD1Q96NR3 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.85■■□□□ 1.09
PTCHD1Q96NR3 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PTCHD1Q96NR3 AC021242.3-201ENST00000607598 1377 ntBASIC21.85■■□□□ 1.09
PTCHD1Q96NR3 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.84■■□□□ 1.09
PTCHD1Q96NR3 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PTCHD1Q96NR3 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTCHD1Q96NR3 AF131216.4-201ENST00000638924 1588 ntBASIC21.84■■□□□ 1.09
PTCHD1Q96NR3 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.84■■□□□ 1.09
PTCHD1Q96NR3 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.84■■□□□ 1.09
PTCHD1Q96NR3 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.84■■□□□ 1.09
PTCHD1Q96NR3 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTCHD1Q96NR3 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTCHD1Q96NR3 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.83■■□□□ 1.09
PTCHD1Q96NR3 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTCHD1Q96NR3 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTCHD1Q96NR3 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTCHD1Q96NR3 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTCHD1Q96NR3 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTCHD1Q96NR3 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
PTCHD1Q96NR3 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PTCHD1Q96NR3 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
PTCHD1Q96NR3 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PTCHD1Q96NR3 GUSBP5-201ENST00000418136 578 ntBASIC21.82■■□□□ 1.08
PTCHD1Q96NR3 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTCHD1Q96NR3 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTCHD1Q96NR3 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.81■■□□□ 1.08
PTCHD1Q96NR3 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.81■■□□□ 1.08
PTCHD1Q96NR3 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.81■■□□□ 1.08
PTCHD1Q96NR3 AC142381.3-201ENST00000568208 1670 ntBASIC21.81■■□□□ 1.08
PTCHD1Q96NR3 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PTCHD1Q96NR3 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.81■■□□□ 1.08
PTCHD1Q96NR3 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PTCHD1Q96NR3 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTCHD1Q96NR3 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTCHD1Q96NR3 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PTCHD1Q96NR3 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTCHD1Q96NR3 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.8■■□□□ 1.08
PTCHD1Q96NR3 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.8■■□□□ 1.08
PTCHD1Q96NR3 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTCHD1Q96NR3 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
PTCHD1Q96NR3 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTCHD1Q96NR3 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTCHD1Q96NR3 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.79■■□□□ 1.08
PTCHD1Q96NR3 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PTCHD1Q96NR3 AP003733.4-201ENST00000623785 1697 ntBASIC21.79■■□□□ 1.08
PTCHD1Q96NR3 AC138932.3-201ENST00000567634 1902 ntBASIC21.78■■□□□ 1.08
PTCHD1Q96NR3 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PTCHD1Q96NR3 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.78■■□□□ 1.08
PTCHD1Q96NR3 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.78■■□□□ 1.08
PTCHD1Q96NR3 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PTCHD1Q96NR3 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
PTCHD1Q96NR3 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.78■■□□□ 1.08
PTCHD1Q96NR3 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.78■■□□□ 1.08
PTCHD1Q96NR3 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
PTCHD1Q96NR3 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PTCHD1Q96NR3 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PTCHD1Q96NR3 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.77■■□□□ 1.08
PTCHD1Q96NR3 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PTCHD1Q96NR3 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PTCHD1Q96NR3 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PTCHD1Q96NR3 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.77■■□□□ 1.08
PTCHD1Q96NR3 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.77■■□□□ 1.08
PTCHD1Q96NR3 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.77■■□□□ 1.08
PTCHD1Q96NR3 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.77■■□□□ 1.08
PTCHD1Q96NR3 AC092028.1-203ENST00000608262 953 ntBASIC21.77■■□□□ 1.08
PTCHD1Q96NR3 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PTCHD1Q96NR3 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PTCHD1Q96NR3 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTCHD1Q96NR3 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTCHD1Q96NR3 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
PTCHD1Q96NR3 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTCHD1Q96NR3 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTCHD1Q96NR3 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PTCHD1Q96NR3 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTCHD1Q96NR3 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms