Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CFAP54Q96N23 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
CFAP54Q96N23 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CFAP54Q96N23 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
CFAP54Q96N23 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
CFAP54Q96N23 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
CFAP54Q96N23 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC23.12■■□□□ 1.29
CFAP54Q96N23 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CFAP54Q96N23 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CFAP54Q96N23 AC093827.2-201ENST00000512654 315 ntBASIC23.12■■□□□ 1.29
CFAP54Q96N23 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CFAP54Q96N23 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.11■■□□□ 1.29
CFAP54Q96N23 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.11■■□□□ 1.29
CFAP54Q96N23 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC23.11■■□□□ 1.29
CFAP54Q96N23 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CFAP54Q96N23 AC008764.7-201ENST00000593779 1081 ntBASIC23.11■■□□□ 1.29
CFAP54Q96N23 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.11■■□□□ 1.29
CFAP54Q96N23 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CFAP54Q96N23 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CFAP54Q96N23 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC23.11■■□□□ 1.29
CFAP54Q96N23 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC23.11■■□□□ 1.29
CFAP54Q96N23 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC23.11■■□□□ 1.29
CFAP54Q96N23 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC23.11■■□□□ 1.29
CFAP54Q96N23 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.11■■□□□ 1.29
CFAP54Q96N23 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
CFAP54Q96N23 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CFAP54Q96N23 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
CFAP54Q96N23 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC23.1■■□□□ 1.29
CFAP54Q96N23 AC099791.1-201ENST00000416440 715 ntBASIC23.1■■□□□ 1.29
CFAP54Q96N23 TMEM191A-211ENST00000637163 1067 ntBASIC23.1■■□□□ 1.29
CFAP54Q96N23 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CFAP54Q96N23 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC23.1■■□□□ 1.29
CFAP54Q96N23 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
CFAP54Q96N23 ARL16-209ENST00000573715 763 ntTSL 3 BASIC23.1■■□□□ 1.29
CFAP54Q96N23 ARL16-211ENST00000576135 694 ntTSL 3 BASIC23.1■■□□□ 1.29
CFAP54Q96N23 AC104771.1-201ENST00000603335 964 ntBASIC23.1■■□□□ 1.29
CFAP54Q96N23 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
CFAP54Q96N23 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CFAP54Q96N23 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC23.1■■□□□ 1.29
CFAP54Q96N23 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CFAP54Q96N23 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CFAP54Q96N23 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
CFAP54Q96N23 AL449106.1-201ENST00000608517 1980 ntBASIC23.09■■□□□ 1.29
CFAP54Q96N23 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC23.09■■□□□ 1.29
CFAP54Q96N23 RAB43-208ENST00000615093 783 ntTSL 5 BASIC23.09■■□□□ 1.29
CFAP54Q96N23 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CFAP54Q96N23 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CFAP54Q96N23 BX255925.1-201ENST00000566954 1854 ntBASIC23.08■■□□□ 1.29
CFAP54Q96N23 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
CFAP54Q96N23 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CFAP54Q96N23 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.08■■□□□ 1.28
CFAP54Q96N23 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.28
CFAP54Q96N23 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CFAP54Q96N23 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC23.07■■□□□ 1.28
CFAP54Q96N23 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CFAP54Q96N23 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.07■■□□□ 1.28
CFAP54Q96N23 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CFAP54Q96N23 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CFAP54Q96N23 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CFAP54Q96N23 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CFAP54Q96N23 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
CFAP54Q96N23 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CFAP54Q96N23 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC23.05■■□□□ 1.28
CFAP54Q96N23 TSPY20P-201ENST00000450910 630 ntBASIC23.05■■□□□ 1.28
CFAP54Q96N23 ME3-201ENST00000323418 1068 ntTSL 5 BASIC23.05■■□□□ 1.28
CFAP54Q96N23 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
CFAP54Q96N23 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
CFAP54Q96N23 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC23.05■■□□□ 1.28
CFAP54Q96N23 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC23.05■■□□□ 1.28
CFAP54Q96N23 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
CFAP54Q96N23 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.04■■□□□ 1.28
CFAP54Q96N23 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CFAP54Q96N23 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC23.04■■□□□ 1.28
CFAP54Q96N23 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CFAP54Q96N23 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
CFAP54Q96N23 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC23.04■■□□□ 1.28
CFAP54Q96N23 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
CFAP54Q96N23 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CFAP54Q96N23 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC23.03■■□□□ 1.28
CFAP54Q96N23 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CFAP54Q96N23 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CFAP54Q96N23 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
CFAP54Q96N23 SERBP1P1-201ENST00000396021 1160 ntBASIC23.02■■□□□ 1.28
CFAP54Q96N23 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
CFAP54Q96N23 SHF-206ENST00000560471 2499 ntTSL 5 BASIC23.02■■□□□ 1.28
CFAP54Q96N23 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.02■■□□□ 1.28
CFAP54Q96N23 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.02■■□□□ 1.28
CFAP54Q96N23 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CFAP54Q96N23 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC23.01■■□□□ 1.27
CFAP54Q96N23 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CFAP54Q96N23 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CFAP54Q96N23 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CFAP54Q96N23 AC123595.1-201ENST00000440769 1046 ntBASIC23.01■■□□□ 1.27
CFAP54Q96N23 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC23.01■■□□□ 1.27
CFAP54Q96N23 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC23.01■■□□□ 1.27
CFAP54Q96N23 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC23.01■■□□□ 1.27
CFAP54Q96N23 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CFAP54Q96N23 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CFAP54Q96N23 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CFAP54Q96N23 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms