Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 SF1-220ENST00000626028 704 ntTSL 2 BASIC24.03■■□□□ 1.44
SLC44A3Q8N4M1 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
SLC44A3Q8N4M1 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
SLC44A3Q8N4M1 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
SLC44A3Q8N4M1 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC24.02■■□□□ 1.44
SLC44A3Q8N4M1 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC24.02■■□□□ 1.44
SLC44A3Q8N4M1 AC097381.1-201ENST00000429019 1296 ntBASIC24.02■■□□□ 1.44
SLC44A3Q8N4M1 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC24.02■■□□□ 1.44
SLC44A3Q8N4M1 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC24.02■■□□□ 1.44
SLC44A3Q8N4M1 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC24.02■■□□□ 1.44
SLC44A3Q8N4M1 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
SLC44A3Q8N4M1 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
SLC44A3Q8N4M1 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
SLC44A3Q8N4M1 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
SLC44A3Q8N4M1 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC24.01■■□□□ 1.43
SLC44A3Q8N4M1 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC24.01■■□□□ 1.43
SLC44A3Q8N4M1 AC091305.1-201ENST00000479476 895 ntBASIC24.01■■□□□ 1.43
SLC44A3Q8N4M1 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC24.01■■□□□ 1.43
SLC44A3Q8N4M1 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC24.01■■□□□ 1.43
SLC44A3Q8N4M1 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
SLC44A3Q8N4M1 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
SLC44A3Q8N4M1 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC24■■□□□ 1.43
SLC44A3Q8N4M1 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC24■■□□□ 1.43
SLC44A3Q8N4M1 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC24■■□□□ 1.43
SLC44A3Q8N4M1 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC24■■□□□ 1.43
SLC44A3Q8N4M1 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SLC44A3Q8N4M1 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SLC44A3Q8N4M1 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SLC44A3Q8N4M1 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.99■■□□□ 1.43
SLC44A3Q8N4M1 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SLC44A3Q8N4M1 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
SLC44A3Q8N4M1 SYT6-210ENST00000641643 1587 ntBASIC23.99■■□□□ 1.43
SLC44A3Q8N4M1 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
SLC44A3Q8N4M1 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
SLC44A3Q8N4M1 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.98■■□□□ 1.43
SLC44A3Q8N4M1 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
SLC44A3Q8N4M1 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
SLC44A3Q8N4M1 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SLC44A3Q8N4M1 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
SLC44A3Q8N4M1 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SLC44A3Q8N4M1 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
SLC44A3Q8N4M1 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.97■■□□□ 1.43
SLC44A3Q8N4M1 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC23.97■■□□□ 1.43
SLC44A3Q8N4M1 AC087623.3-201ENST00000607047 1098 ntBASIC23.97■■□□□ 1.43
SLC44A3Q8N4M1 AC005703.6-201ENST00000623265 1329 ntBASIC23.97■■□□□ 1.43
SLC44A3Q8N4M1 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SLC44A3Q8N4M1 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
SLC44A3Q8N4M1 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.96■■□□□ 1.43
SLC44A3Q8N4M1 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
SLC44A3Q8N4M1 MIR4767-201ENST00000582827 78 ntBASIC23.95■■□□□ 1.42
SLC44A3Q8N4M1 MAG-206ENST00000597035 542 ntTSL 4 BASIC23.95■■□□□ 1.42
SLC44A3Q8N4M1 AC092171.4-201ENST00000609130 632 ntBASIC23.95■■□□□ 1.42
SLC44A3Q8N4M1 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SLC44A3Q8N4M1 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SLC44A3Q8N4M1 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23.94■■□□□ 1.42
SLC44A3Q8N4M1 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SLC44A3Q8N4M1 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC23.94■■□□□ 1.42
SLC44A3Q8N4M1 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
SLC44A3Q8N4M1 CA15P2-201ENST00000611168 834 ntBASIC23.94■■□□□ 1.42
SLC44A3Q8N4M1 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SLC44A3Q8N4M1 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SLC44A3Q8N4M1 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.93■■□□□ 1.42
SLC44A3Q8N4M1 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SLC44A3Q8N4M1 RASA4CP-201ENST00000424092 1398 ntBASIC23.93■■□□□ 1.42
SLC44A3Q8N4M1 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SLC44A3Q8N4M1 AL162430.1-201ENST00000480705 870 ntBASIC23.93■■□□□ 1.42
SLC44A3Q8N4M1 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
SLC44A3Q8N4M1 PLD4-205ENST00000553861 667 ntTSL 2 BASIC23.93■■□□□ 1.42
SLC44A3Q8N4M1 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SLC44A3Q8N4M1 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
SLC44A3Q8N4M1 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.93■■□□□ 1.42
SLC44A3Q8N4M1 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SLC44A3Q8N4M1 AC097639.1-201ENST00000565519 1891 ntBASIC23.92■■□□□ 1.42
SLC44A3Q8N4M1 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
SLC44A3Q8N4M1 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.92■■□□□ 1.42
SLC44A3Q8N4M1 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC23.92■■□□□ 1.42
SLC44A3Q8N4M1 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SLC44A3Q8N4M1 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
SLC44A3Q8N4M1 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.92■■□□□ 1.42
SLC44A3Q8N4M1 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
SLC44A3Q8N4M1 GLI3-203ENST00000437480 451 ntTSL 2 BASIC23.91■■□□□ 1.42
SLC44A3Q8N4M1 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
SLC44A3Q8N4M1 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.91■■□□□ 1.42
SLC44A3Q8N4M1 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
SLC44A3Q8N4M1 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
SLC44A3Q8N4M1 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.9■■□□□ 1.42
SLC44A3Q8N4M1 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
SLC44A3Q8N4M1 SERBP1P1-201ENST00000396021 1160 ntBASIC23.9■■□□□ 1.42
SLC44A3Q8N4M1 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
SLC44A3Q8N4M1 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
SLC44A3Q8N4M1 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
SLC44A3Q8N4M1 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC23.89■■□□□ 1.41
SLC44A3Q8N4M1 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC23.89■■□□□ 1.41
SLC44A3Q8N4M1 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
SLC44A3Q8N4M1 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC23.89■■□□□ 1.41
SLC44A3Q8N4M1 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.89■■□□□ 1.41
SLC44A3Q8N4M1 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SLC44A3Q8N4M1 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
SLC44A3Q8N4M1 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SLC44A3Q8N4M1 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC23.88■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms