Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RPUSD3Q6P087 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RPUSD3Q6P087 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.26■□□□□ 0.99
RPUSD3Q6P087 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RPUSD3Q6P087 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RPUSD3Q6P087 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RPUSD3Q6P087 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RPUSD3Q6P087 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RPUSD3Q6P087 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RPUSD3Q6P087 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
RPUSD3Q6P087 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.25■□□□□ 0.99
RPUSD3Q6P087 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.25■□□□□ 0.99
RPUSD3Q6P087 AC097639.1-201ENST00000565519 1891 ntBASIC21.25■□□□□ 0.99
RPUSD3Q6P087 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.25■□□□□ 0.99
RPUSD3Q6P087 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.24■□□□□ 0.99
RPUSD3Q6P087 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.24■□□□□ 0.99
RPUSD3Q6P087 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RPUSD3Q6P087 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RPUSD3Q6P087 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RPUSD3Q6P087 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.24■□□□□ 0.99
RPUSD3Q6P087 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.24■□□□□ 0.99
RPUSD3Q6P087 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RPUSD3Q6P087 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RPUSD3Q6P087 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
RPUSD3Q6P087 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RPUSD3Q6P087 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.23■□□□□ 0.99
RPUSD3Q6P087 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RPUSD3Q6P087 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
RPUSD3Q6P087 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RPUSD3Q6P087 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RPUSD3Q6P087 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.21■□□□□ 0.99
RPUSD3Q6P087 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.21■□□□□ 0.99
RPUSD3Q6P087 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.21■□□□□ 0.99
RPUSD3Q6P087 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
RPUSD3Q6P087 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RPUSD3Q6P087 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RPUSD3Q6P087 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RPUSD3Q6P087 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RPUSD3Q6P087 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.2■□□□□ 0.98
RPUSD3Q6P087 AC106739.1-201ENST00000617035 715 ntBASIC21.2■□□□□ 0.98
RPUSD3Q6P087 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RPUSD3Q6P087 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
RPUSD3Q6P087 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RPUSD3Q6P087 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RPUSD3Q6P087 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RPUSD3Q6P087 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPUSD3Q6P087 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.19■□□□□ 0.98
RPUSD3Q6P087 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.19■□□□□ 0.98
RPUSD3Q6P087 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.19■□□□□ 0.98
RPUSD3Q6P087 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RPUSD3Q6P087 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.19■□□□□ 0.98
RPUSD3Q6P087 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
RPUSD3Q6P087 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPUSD3Q6P087 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.19■□□□□ 0.98
RPUSD3Q6P087 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RPUSD3Q6P087 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
RPUSD3Q6P087 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
RPUSD3Q6P087 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPUSD3Q6P087 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.17■□□□□ 0.98
RPUSD3Q6P087 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RPUSD3Q6P087 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPUSD3Q6P087 AC096887.2-201ENST00000623443 1957 ntBASIC21.17■□□□□ 0.98
RPUSD3Q6P087 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
RPUSD3Q6P087 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.17■□□□□ 0.98
RPUSD3Q6P087 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPUSD3Q6P087 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.16■□□□□ 0.98
RPUSD3Q6P087 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPUSD3Q6P087 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPUSD3Q6P087 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPUSD3Q6P087 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.16■□□□□ 0.98
RPUSD3Q6P087 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.16■□□□□ 0.98
RPUSD3Q6P087 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPUSD3Q6P087 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RPUSD3Q6P087 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.15■□□□□ 0.98
RPUSD3Q6P087 PBX2P1-201ENST00000493219 1291 ntBASIC21.15■□□□□ 0.98
RPUSD3Q6P087 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.15■□□□□ 0.98
RPUSD3Q6P087 AC091060.1-201ENST00000623524 1766 ntBASIC21.15■□□□□ 0.98
RPUSD3Q6P087 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
RPUSD3Q6P087 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
RPUSD3Q6P087 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RPUSD3Q6P087 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RPUSD3Q6P087 AC004448.1-201ENST00000458332 883 ntBASIC21.14■□□□□ 0.97
RPUSD3Q6P087 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RPUSD3Q6P087 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.14■□□□□ 0.97
RPUSD3Q6P087 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.14■□□□□ 0.97
RPUSD3Q6P087 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
RPUSD3Q6P087 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
RPUSD3Q6P087 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPUSD3Q6P087 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
RPUSD3Q6P087 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.13■□□□□ 0.97
RPUSD3Q6P087 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.13■□□□□ 0.97
RPUSD3Q6P087 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.13■□□□□ 0.97
RPUSD3Q6P087 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.13■□□□□ 0.97
RPUSD3Q6P087 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.13■□□□□ 0.97
RPUSD3Q6P087 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
RPUSD3Q6P087 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPUSD3Q6P087 UNC93B3-201ENST00000308076 687 ntBASIC21.12■□□□□ 0.97
RPUSD3Q6P087 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPUSD3Q6P087 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RPUSD3Q6P087 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms