Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC28.83■■■□□ 2.21
CCDC88AQ3V6T2 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC28.83■■■□□ 2.21
CCDC88AQ3V6T2 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC28.83■■■□□ 2.2
CCDC88AQ3V6T2 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC28.83■■■□□ 2.2
CCDC88AQ3V6T2 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC28.83■■■□□ 2.2
CCDC88AQ3V6T2 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC28.83■■■□□ 2.2
CCDC88AQ3V6T2 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC28.83■■■□□ 2.2
CCDC88AQ3V6T2 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
CCDC88AQ3V6T2 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC28.82■■■□□ 2.2
CCDC88AQ3V6T2 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC28.82■■■□□ 2.2
CCDC88AQ3V6T2 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC28.82■■■□□ 2.2
CCDC88AQ3V6T2 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
CCDC88AQ3V6T2 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
CCDC88AQ3V6T2 GATM-206ENST00000558336 1522 ntTSL 2 BASIC28.81■■■□□ 2.2
CCDC88AQ3V6T2 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC28.81■■■□□ 2.2
CCDC88AQ3V6T2 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC28.8■■■□□ 2.2
CCDC88AQ3V6T2 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
CCDC88AQ3V6T2 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC28.8■■■□□ 2.2
CCDC88AQ3V6T2 RBM38-205ENST00000440234 686 ntTSL 2 BASIC28.8■■■□□ 2.2
CCDC88AQ3V6T2 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC28.79■■■□□ 2.2
CCDC88AQ3V6T2 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC28.79■■■□□ 2.2
CCDC88AQ3V6T2 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC28.79■■■□□ 2.2
CCDC88AQ3V6T2 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
CCDC88AQ3V6T2 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
CCDC88AQ3V6T2 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
CCDC88AQ3V6T2 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
CCDC88AQ3V6T2 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
CCDC88AQ3V6T2 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC28.78■■■□□ 2.2
CCDC88AQ3V6T2 MAG-206ENST00000597035 542 ntTSL 4 BASIC28.78■■■□□ 2.2
CCDC88AQ3V6T2 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC28.78■■■□□ 2.2
CCDC88AQ3V6T2 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC28.78■■■□□ 2.2
CCDC88AQ3V6T2 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
CCDC88AQ3V6T2 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
CCDC88AQ3V6T2 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
CCDC88AQ3V6T2 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
CCDC88AQ3V6T2 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
CCDC88AQ3V6T2 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC28.78■■■□□ 2.2
CCDC88AQ3V6T2 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC28.78■■■□□ 2.2
CCDC88AQ3V6T2 DUX4L19-201ENST00000557448 1267 ntBASIC28.78■■■□□ 2.2
CCDC88AQ3V6T2 SSSCA1-AS1-201ENST00000567594 614 ntBASIC28.78■■■□□ 2.2
CCDC88AQ3V6T2 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
CCDC88AQ3V6T2 AC096887.2-201ENST00000623443 1957 ntBASIC28.78■■■□□ 2.2
CCDC88AQ3V6T2 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC28.77■■■□□ 2.2
CCDC88AQ3V6T2 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC28.77■■■□□ 2.2
CCDC88AQ3V6T2 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
CCDC88AQ3V6T2 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
CCDC88AQ3V6T2 HACD1-201ENST00000326961 773 ntTSL 2 BASIC28.77■■■□□ 2.2
CCDC88AQ3V6T2 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
CCDC88AQ3V6T2 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC28.77■■■□□ 2.2
CCDC88AQ3V6T2 MIR6722-201ENST00000617286 78 ntBASIC28.77■■■□□ 2.2
CCDC88AQ3V6T2 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
CCDC88AQ3V6T2 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC28.76■■■□□ 2.2
CCDC88AQ3V6T2 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
CCDC88AQ3V6T2 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
CCDC88AQ3V6T2 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
CCDC88AQ3V6T2 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC28.76■■■□□ 2.19
CCDC88AQ3V6T2 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC28.76■■■□□ 2.19
CCDC88AQ3V6T2 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
CCDC88AQ3V6T2 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC28.76■■■□□ 2.19
CCDC88AQ3V6T2 AC034268.1-201ENST00000441047 882 ntBASIC28.76■■■□□ 2.19
CCDC88AQ3V6T2 RARRES2P11-201ENST00000635158 484 ntBASIC28.76■■■□□ 2.19
CCDC88AQ3V6T2 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
CCDC88AQ3V6T2 ERN1-208ENST00000606895 2068 ntBASIC28.75■■■□□ 2.19
CCDC88AQ3V6T2 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC28.75■■■□□ 2.19
CCDC88AQ3V6T2 RHOF-204ENST00000537265 699 ntTSL 2 BASIC28.75■■■□□ 2.19
CCDC88AQ3V6T2 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC28.75■■■□□ 2.19
CCDC88AQ3V6T2 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC28.75■■■□□ 2.19
CCDC88AQ3V6T2 AL121749.1-202ENST00000609313 2153 ntBASIC28.74■■■□□ 2.19
CCDC88AQ3V6T2 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC28.74■■■□□ 2.19
CCDC88AQ3V6T2 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC28.74■■■□□ 2.19
CCDC88AQ3V6T2 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC28.74■■■□□ 2.19
CCDC88AQ3V6T2 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC28.74■■■□□ 2.19
CCDC88AQ3V6T2 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC28.74■■■□□ 2.19
CCDC88AQ3V6T2 LBH-205ENST00000407930 756 ntTSL 2 BASIC28.74■■■□□ 2.19
CCDC88AQ3V6T2 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC28.74■■■□□ 2.19
CCDC88AQ3V6T2 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
CCDC88AQ3V6T2 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
CCDC88AQ3V6T2 PTCHD3P2-201ENST00000424937 1205 ntBASIC28.73■■■□□ 2.19
CCDC88AQ3V6T2 RASA4CP-201ENST00000424092 1398 ntBASIC28.73■■■□□ 2.19
CCDC88AQ3V6T2 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
CCDC88AQ3V6T2 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC28.73■■■□□ 2.19
CCDC88AQ3V6T2 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC28.73■■■□□ 2.19
CCDC88AQ3V6T2 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CCDC88AQ3V6T2 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC28.72■■■□□ 2.19
CCDC88AQ3V6T2 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
CCDC88AQ3V6T2 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC28.72■■■□□ 2.19
CCDC88AQ3V6T2 CA15P2-201ENST00000611168 834 ntBASIC28.72■■■□□ 2.19
CCDC88AQ3V6T2 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC28.71■■■□□ 2.19
CCDC88AQ3V6T2 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC28.71■■■□□ 2.19
CCDC88AQ3V6T2 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC28.7■■■□□ 2.19
CCDC88AQ3V6T2 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC28.7■■■□□ 2.19
CCDC88AQ3V6T2 JTB-203ENST00000368589 1216 ntTSL 2 BASIC28.7■■■□□ 2.19
CCDC88AQ3V6T2 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC28.7■■■□□ 2.19
CCDC88AQ3V6T2 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
CCDC88AQ3V6T2 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
CCDC88AQ3V6T2 SRD5A1P1-201ENST00000442297 786 ntBASIC28.7■■■□□ 2.18
CCDC88AQ3V6T2 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
CCDC88AQ3V6T2 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
CCDC88AQ3V6T2 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CCDC88AQ3V6T2 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms